Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006386 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 2.9e-115 419.1 305 92.5
CSS0008974 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 2.9e-115 419.1 305 100.0
CSS0048401 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 4.7e-113 411.8 305 75.1
CSS0033325 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 1.4e-101 373.6 305 74.1
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 2.2e-70 270.0 256 59.8
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 7.1e-69 265.0 139 95.0
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 3.7e-65 252.7 262 77.1
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 4.8e-65 252.3 262 77.1
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 1.4e-64 250.8 257 72.0
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 3.1e-64 249.6 257 69.6
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 9.0e-64 248.1 262 68.3
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.2e-63 247.7 257 61.1
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.2e-63 247.7 267 64.8
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 3.4e-63 246.1 257 82.5
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 5.8e-63 245.4 257 70.8
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 5.8e-63 245.4 257 69.3
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 1.7e-62 243.8 266 55.3
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 2.2e-62 243.4 267 63.3
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 3.8e-62 242.7 269 66.5
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 6.4e-62 241.9 257 61.5
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 1.1e-61 241.1 269 74.7
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 1.1e-61 241.1 257 69.3
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 1.1e-61 241.1 255 80.0
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.4e-61 240.7 269 71.4
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 4.2e-61 239.2 270 69.3
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 7.1e-61 238.4 257 72.0
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 3.5e-60 236.1 269 61.7
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 6.0e-60 235.3 269 74.7
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.0e-59 234.6 139 86.3
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 3.9e-59 232.6 139 85.6
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 3.9e-59 232.6 139 84.9
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 3.9e-59 232.6 269 61.7
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 5.1e-59 232.3 257 73.5
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 5.1e-59 232.3 139 84.2
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 1.1e-58 231.1 139 82.7
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 1.9e-58 230.3 255 53.7
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 2.5e-58 229.9 269 63.6
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 3.3e-58 229.6 248 67.3
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 7.4e-58 228.4 139 81.3
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.3e-57 227.6 253 52.6
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 1.3e-57 227.6 139 81.3
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 1.6e-57 227.3 256 78.5
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 2.1e-57 226.9 257 73.9
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 2.8e-57 226.5 259 60.2
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 3.7e-57 226.1 256 68.8
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 3.7e-57 226.1 139 82.7
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 3.7e-57 226.1 139 81.3
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 4.8e-57 225.7 257 67.7
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 6.2e-57 225.3 262 61.5
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 6.2e-57 225.3 139 82.7
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 6.2e-57 225.3 139 80.6
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 8.2e-57 224.9 257 74.7
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.1e-56 224.6 257 66.9
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 1.1e-56 224.6 139 79.1
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 1.1e-56 224.6 139 80.6
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.4e-56 224.2 257 66.9
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 1.8e-56 223.8 257 68.9
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 2.4e-56 223.4 139 80.6
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 2.4e-56 223.4 257 66.5
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.4e-56 223.4 139 79.9
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 2.4e-56 223.4 139 79.9
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 2.4e-56 223.4 139 81.3
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 2.4e-56 223.4 139 80.6
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 3.1e-56 223.0 139 80.6
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 3.1e-56 223.0 139 78.4
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 3.1e-56 223.0 139 81.3
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 4.0e-56 222.6 257 60.3
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 5.3e-56 222.2 248 69.4
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 5.3e-56 222.2 139 79.1
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 6.9e-56 221.9 139 80.6
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 6.9e-56 221.9 138 79.7
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 9.0e-56 221.5 139 81.3
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 1.2e-55 221.1 257 71.2
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 1.5e-55 220.7 139 78.4
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 1.5e-55 220.7 139 79.9
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.0e-55 220.3 257 66.5
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 2.0e-55 220.3 139 79.1
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 2.0e-55 220.3 139 77.7
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 3.4e-55 219.5 137 78.1
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 3.4e-55 219.5 139 79.1
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 3.4e-55 219.5 138 79.0
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 4.5e-55 219.2 139 78.4
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 4.5e-55 219.2 139 80.6
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 5.8e-55 218.8 271 52.8
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 7.6e-55 218.4 139 78.4
FAN06G4966 Fragaria x ananassa HOM05D002696 ORTHO05D003940 7.6e-55 218.4 262 66.0
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 7.6e-55 218.4 138 77.5
FAN06G4355 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.0e-54 218.0 139 77.7
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 1.0e-54 218.0 139 79.9
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 1.3e-54 217.6 139 79.9
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 1.7e-54 217.2 139 79.9
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 1.7e-54 217.2 139 77.7
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 2.2e-54 216.9 139 77.0
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 2.9e-54 216.5 137 81.0
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 2.9e-54 216.5 139 77.7
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.9e-54 216.5 261 65.9
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 3.8e-54 216.1 139 78.4
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 3.8e-54 216.1 139 77.7
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 4.9e-54 215.7 139 77.7
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 4.9e-54 215.7 139 77.7
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 6.5e-54 215.3 139 77.7
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 8.4e-54 214.9 135 80.7
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 8.4e-54 214.9 135 80.7
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 8.4e-54 214.9 262 56.1
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 1.1e-53 214.5 139 77.0
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.1e-53 214.5 259 65.3
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 1.4e-53 214.2 257 63.0
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.9e-53 213.8 139 77.7
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 1.9e-53 213.8 139 77.7
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.9e-53 213.8 139 77.7
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 1.9e-53 213.8 139 77.7
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 1.9e-53 213.8 139 77.7
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 3.2e-53 213.0 139 76.3
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 3.2e-53 213.0 139 76.3
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 4.2e-53 212.6 267 65.9
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 4.2e-53 212.6 139 74.8
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 4.2e-53 212.6 139 77.0
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 5.5e-53 212.2 139 77.0
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 7.1e-53 211.8 139 76.3
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 7.1e-53 211.8 139 76.3
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 9.3e-53 211.5 139 75.5
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 1.2e-52 211.1 139 75.5
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.2e-52 211.1 139 76.3
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 1.6e-52 210.7 139 77.0
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 2.1e-52 210.3 139 75.5
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 2.1e-52 210.3 139 76.3
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.0e-51 208.0 261 65.5
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 8.7e-51 204.9 139 71.9
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.1e-50 204.5 258 63.6
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 1.9e-50 203.8 138 73.9
SEGI_01462 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 1.9e-50 203.8 139 71.2
FvH4_7g27643 Fragaria vesca HOM05D002696 ORTHO05D003940 3.3e-50 203.0 139 74.1
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 3.7e-49 199.5 139 70.5
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 4.6e-44 182.6 139 62.6
Aqoxy7G02845 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.5e-42 177.6 135 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 1.7e-41 174.1 139 63.3
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 6.9e-40 168.7 139 61.2
CBR_g40808 Chara braunii HOM05D002696 ORTHO05D003940 1.5e-39 167.5 139 59.7
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.4e-37 161.0 139 59.0
MBI14_g23360_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 2.5e-37 160.2 108 73.1
MBI12_g17812_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.6e-36 157.5 108 73.1
MBI05_g15481_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 4.6e-36 156.0 108 72.2
MCO13G593 Micromonas commoda HOM05D002696 ORTHO05D003940 2.3e-35 153.7 139 56.8
MBI14_g00416_MAGBIO Magnolia biondii HOM05D002410 ORTHO05D011600 1.1e-32 144.8 108 68.5
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 6.9e-32 142.1 138 51.4
MBI10_g30245_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 3.8e-30 136.3 85 82.4
arahy.Tifrunner.gnm1.ann1.REY0GV Arachis hypogaea HOM05D002696 ORTHO05D011600 3.9e-27 126.3 103 68.0
FAN10G0513 Fragaria x ananassa HOM05D002696 ORTHO05D011600 2.0e-26 124.0 79 74.7
MBI11_g16498_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 3.3e-26 123.2 89 65.2
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.7e-25 120.9 84 75.0
arahy.Tifrunner.gnm1.ann1.MK0HFG Arachis hypogaea HOM05D002696 ORTHO05D011600 4.8e-25 119.4 82 75.6
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.3e-24 115.9 87 71.3
MBI18_g00540_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 5.3e-24 115.9 85 68.2
MBI05_g00255_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 4.5e-23 112.8 89 60.7
Cre02.g086650 Chlamydomonas reinhardtii HOM05D002696 ORTHO05D003940 6.5e-22 109.0 139 41.7
FAN10G0536 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.1e-20 104.0 67 77.6
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 6.1e-20 102.4 89 62.9
FAN01G1139 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.0e-19 101.7 67 76.1
MBI08_g12708_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D000022 1.4e-19 101.3 62 83.9
Cfa024848 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.2e-18 98.2 134 41.0
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 1.2e-18 98.2 139 42.4
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.0e-18 97.4 59 86.4
MBI14_g07051_MAGBIO Magnolia biondii HOM05D002410 ORTHO05D002805 4.4e-18 96.3 108 50.0
MBI02_g02068_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 5.7e-18 95.9 60 81.7
Actinidia22999 Actinidia chinensis HOM05D002696 ORTHO05D011600 2.8e-17 93.6 139 43.2
MBI18_g32983_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 3.7e-17 93.2 57 84.2
FAN06G3863 Fragaria x ananassa HOM05D002696 ORTHO05D011600 4.1e-16 89.7 53 86.8
MBI09_g21103_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 5.3e-16 89.4 59 83.1
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 3.5e-15 86.7 249 46.2
FvH4_7g27331 Fragaria vesca HOM05D002696 ORTHO05D003940 4.5e-15 86.3 53 81.1
MBI14_g24976_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 5.9e-15 85.9 60 66.7
MBI18_g43604_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.7e-14 84.3 58 75.9
MBI18_g38010_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 2.2e-14 84.0 89 56.2
MBI13_g39738_MAGBIO Magnolia biondii HOM05D002410 ORTHO05D011600 1.2e-12 78.2 65 69.2
SalBow8G2689 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.6e-12 77.8 53 77.4
MBI01_g24085_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 4.7e-12 76.3 56 60.7
GSVIVG01018699001 Vitis vinifera HOM05D002696 ORTHO05D003940 1.4e-11 74.7 54 72.2
arahy.Tifrunner.gnm1.ann1.D9AMXU Arachis hypogaea HOM05D004200 ORTHO05D004996 1.8e-11 74.3 75 58.7
SalBow8G2062 Salvia bowleyana HOM05D002696 ORTHO05D011600 2.9e-06 57.0 48 54.2


User provided reference genes

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