Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008927 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 4.8e-117 424.5 210 100.0
CSS0002631 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.4e-103 379.8 191 97.4
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 2.1e-80 302.8 172 84.9
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 7.1e-76 287.7 164 85.4
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 2.1e-75 286.2 172 82.0
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 8.6e-74 280.8 168 82.7
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.1e-73 280.4 170 80.6
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 1.5e-73 280.0 170 80.6
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.9e-73 279.6 172 80.8
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 5.6e-73 278.1 174 77.0
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 7.3e-73 277.7 170 79.4
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 6.2e-72 274.6 172 77.9
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 6.2e-72 274.6 185 73.5
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 1.8e-71 273.1 165 82.4
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 3.4e-70 268.9 174 75.3
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 4.4e-70 268.5 172 75.0
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 7.5e-70 267.7 164 81.7
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 9.9e-70 267.3 172 76.2
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 3.7e-69 265.4 172 74.4
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.9e-69 265.0 184 71.2
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 6.4e-69 264.6 174 74.7
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 6.4e-69 264.6 182 70.9
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 8.3e-69 264.2 192 69.8
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 1.4e-68 263.5 190 68.4
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 1.4e-68 263.5 174 74.7
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 9.2e-68 260.8 164 76.8
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 2.7e-67 259.2 164 75.0
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 3.5e-67 258.8 164 77.4
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 6.0e-67 258.1 167 75.4
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 1.0e-66 257.3 172 72.7
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 2.3e-66 256.1 175 74.3
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.9e-66 255.4 168 75.0
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 3.9e-66 255.4 172 73.3
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 3.9e-66 255.4 178 70.2
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 3.9e-66 255.4 164 77.4
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 5.1e-66 255.0 173 74.0
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 8.6e-66 254.2 164 76.2
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.9e-65 253.1 172 73.8
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 2.5e-65 252.7 164 75.0
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 2.5e-65 252.7 175 70.9
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 2.5e-65 252.7 165 72.7
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 3.3e-65 252.3 167 74.3
FvH4_3g27030 Fragaria vesca HOM05D004148 ORTHO05D004709 2.8e-64 249.2 160 75.6
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 4.7e-64 248.4 178 67.4
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 1.4e-63 246.9 174 72.4
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 3.1e-63 245.7 172 70.3
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 4.0e-63 245.4 170 70.0
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 6.8e-63 244.6 170 70.0
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.2e-62 243.8 166 70.5
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 1.2e-62 243.8 170 70.0
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 1.5e-62 243.4 176 67.0
CiPaw.13G126900 Carya illinoinensis HOM05D004148 ORTHO05D004709 1.5e-62 243.4 172 70.3
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 2.6e-62 242.7 166 69.9
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 4.4e-62 241.9 170 68.8
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 7.6e-62 241.1 170 68.2
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 9.9e-62 240.7 170 67.1
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 1.7e-61 240.0 164 70.1
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 1.7e-61 240.0 166 70.5
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 2.2e-61 239.6 176 65.9
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 2.2e-61 239.6 166 70.5
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 2.9e-61 239.2 174 67.2
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 3.8e-61 238.8 176 66.5
Carub.0005s0933 Capsella rubella HOM05D004148 ORTHO05D004709 4.9e-61 238.4 176 64.2
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 6.4e-61 238.0 169 65.7
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 1.4e-60 236.9 172 68.0
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 1.4e-60 236.9 166 69.3
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 1.4e-60 236.9 166 69.3
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.4e-60 236.9 166 69.3
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 2.4e-60 236.1 176 64.8
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 1.6e-59 233.4 172 65.1
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 2.1e-59 233.0 170 66.5
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 2.1e-59 233.0 172 67.4
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 6.0e-59 231.5 172 65.1
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 7.8e-59 231.1 176 63.1
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 1.0e-58 230.7 152 71.7
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 3.0e-58 229.2 165 67.9
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 3.0e-58 229.2 164 68.3
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 3.9e-58 228.8 169 65.1
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 5.1e-58 228.4 164 67.7
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 2.5e-57 226.1 164 68.9
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 2.5e-57 226.1 177 63.8
AUR62001591 Chenopodium quinoa HOM05D004148 ORTHO05D004709 7.3e-57 224.6 157 68.2
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 1.6e-56 223.4 164 64.6
CARHR289540 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.1e-55 220.7 151 70.9
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 1.8e-55 219.9 164 64.6
MD03G1162300 Malus domestica HOM05D004148 ORTHO05D004709 2.6e-54 216.1 157 71.3
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 2.7e-51 206.1 166 59.6
Cpa.g.sc103.96 Carica papaya HOM05D004148 ORTHO05D004709 2.3e-50 203.0 127 74.8
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 5.1e-50 201.8 177 55.9
unitig_21.g20311 Utricularia gibba HOM05D004148 ORTHO05D004709 2.8e-48 196.1 180 51.7
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 1.2e-46 190.7 157 62.4
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 1.2e-46 190.7 176 52.3
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 4.9e-45 185.3 141 68.8
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 1.4e-39 167.2 166 54.2
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 5.8e-38 161.8 113 69.0
Haze_23626 Corylus avellana HOM05D004148 ORTHO05D004709 1.3e-34 150.6 82 85.4
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 1.9e-33 146.7 176 43.2
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 1.6e-32 143.7 184 41.3
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 2.8e-32 142.9 187 38.5
CARHR148720 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.1e-31 141.0 152 52.6
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 1.9e-25 120.2 205 37.1
SHI25292 Sapria himalayana HOM05D004148 ORTHO05D004709 5.7e-25 118.6 113 57.5
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 2.4e-23 113.2 164 44.5
SMO172G0086 Selaginella moellendorffii HOM05D004148 ORTHO05D004709 2.0e-22 110.2 127 41.7
SHI25291 Sapria himalayana HOM05D004148 ORTHO05D004709 2.0e-17 93.6 63 65.1
Os04g0566800 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 2.8e-16 89.7 82 52.4
Zm00001eb043190 Zea mays HOM05D004148 ORTHO05D006109 6.3e-16 88.6 73 63.0
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 5.0e-13 79.0 66 56.1
Psat3g010920 Pisum sativum HOM05D004148 ORTHO05D004709 2.2e-08 63.5 42 73.8
MD03G1288900 Malus domestica HOM05D000880 ORTHO05D007053 2.8e-08 63.2 155 25.8
Sed0026689 Sechium edule HOM05D000880 ORTHO05D007053 4.1e-07 59.3 167 23.4
Cfa021858 Carpinus fangiana HOM05D004581 ORTHO05D006211 5.3e-07 58.9 161 28.6
Prupe.8G262200 Prunus persica HOM05D000880 ORTHO05D007053 9.1e-07 58.2 157 23.6
HPP92_007056 Vanilla planifolia HOM05D000880 ORTHO05D007053 1.2e-06 57.8 159 23.9
Atru.chr5.1139 Acer truncatum HOM05D000880 ORTHO05D007053 2.0e-06 57.0 161 23.0
CBR_g7989 Chara braunii HOM05D004581 ORTHO05D006211 2.0e-06 57.0 168 25.6
arahy.Tifrunner.gnm1.ann1.1T2QZ7 Arachis hypogaea HOM05D005083 ORTHO05D006310 3.5e-06 56.2 171 24.6
arahy.Tifrunner.gnm1.ann1.PCAY5Y Arachis hypogaea HOM05D005083 ORTHO05D006310 3.5e-06 56.2 171 24.6
Phvul.007G147200 Phaseolus vulgaris HOM05D000880 ORTHO05D007053 3.5e-06 56.2 154 24.0
Psat4g206560 Pisum sativum HOM05D005083 ORTHO05D006310 3.5e-06 56.2 203 23.6
AL5G34740 Arabidopsis lyrata HOM05D000880 ORTHO05D007053 4.5e-06 55.8 156 25.6
Carub.0005s2034 Capsella rubella HOM05D000880 ORTHO05D007053 4.5e-06 55.8 156 25.6
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 4.5e-06 55.8 159 25.2
Phvul.010G031700 Phaseolus vulgaris HOM05D005083 ORTHO05D006310 4.5e-06 55.8 199 23.6
TPR.G28978 Trifolium pratense HOM05D005083 ORTHO05D006310 4.5e-06 55.8 203 23.6
Zm00001eb314430 Zea mays HOM05D004581 ORTHO05D006211 4.5e-06 55.8 175 25.1
AT3G53760 Arabidopsis thaliana HOM05D000880 ORTHO05D007053 5.9e-06 55.5 157 26.1
Ca_30805_v3 Cicer arietinum L. HOM05D005083 ORTHO05D006310 5.9e-06 55.5 203 23.6
ClCG03G013010 Citrullus lanatus HOM05D000880 ORTHO05D007053 5.9e-06 55.5 210 20.5
Glyma.20G051200 Glycine max HOM05D005083 ORTHO05D006310 5.9e-06 55.5 179 23.5
MD11G1309000 Malus domestica HOM05D000880 ORTHO05D007053 7.7e-06 55.1 183 24.0


User provided reference genes

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