Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008485 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D033867 1.8e-84 315.8 158 100.0
CSS0037663 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D033867 4.6e-80 301.2 158 95.6
CSS0042221 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D033867 4.6e-80 301.2 158 95.6
Eucgr.A02140 Eucalyptus grandis HOM05D002168 ORTHO05D002277 2.9e-21 105.9 82 72.0
Medtr7g086640 Medicago truncatula HOM05D002168 ORTHO05D002277 2.9e-21 105.9 80 73.8
Psat0s2078g0040 Pisum sativum HOM05D002168 ORTHO05D002277 2.9e-21 105.9 82 72.0
Phvul.001G105633 Phaseolus vulgaris HOM05D002168 ORTHO05D002277 4.9e-21 105.1 105 60.0
arahy.Tifrunner.gnm1.ann1.B3FMDE Arachis hypogaea HOM05D002168 ORTHO05D002277 1.1e-20 104.0 80 72.5
arahy.Tifrunner.gnm1.ann1.V0KP8I Arachis hypogaea HOM05D002168 ORTHO05D002277 1.1e-20 104.0 80 72.5
Ca_08312_v3 Cicer arietinum L. HOM05D002168 ORTHO05D002277 1.1e-20 104.0 80 72.5
Glyma.19G116700 Glycine max HOM05D002168 ORTHO05D002277 1.4e-20 103.6 80 71.2
Lalb_Chr14g0364831 Lupinus albus HOM05D002168 ORTHO05D002277 1.9e-20 103.2 80 71.2
Atru.chr2.1516 Acer truncatum HOM05D002168 ORTHO05D002277 3.2e-20 102.4 68 77.9
Actinidia03921 Actinidia chinensis HOM05D002168 ORTHO05D002277 4.1e-20 102.1 80 71.2
ECA238G2164 Erigeron canadensis HOM05D002168 ORTHO05D002277 4.1e-20 102.1 80 70.0
PGR042G1483 Punica granatum HOM05D002168 ORTHO05D002277 4.1e-20 102.1 80 70.0
VMungo1383G0989 Vigna mungo HOM05D002168 ORTHO05D002277 4.1e-20 102.1 80 71.2
Lsat_1_v5_gn_2_103701 Lactuca sativa HOM05D002168 ORTHO05D002277 5.4e-20 101.7 80 70.0
SGA_v2.0_scaffold69G23217 Striga asiatica HOM05D002168 ORTHO05D002277 5.4e-20 101.7 80 70.0
Cpa.g.sc1931.1 Carica papaya HOM05D002168 ORTHO05D002277 7.0e-20 101.3 80 70.0
Cc06_g21470 Coffea canephora HOM05D002168 ORTHO05D002277 7.0e-20 101.3 80 70.0
Dinv25043 Davidia involucrata HOM05D002168 ORTHO05D002277 7.0e-20 101.3 80 70.0
Migut.J01542 Erythranthe guttata HOM05D002168 ORTHO05D002277 7.0e-20 101.3 80 68.8
HanXRQChr07g0196271 Helianthus annuus HOM05D002168 ORTHO05D002277 7.0e-20 101.3 80 68.8
Lj1g0016812 Lotus japonicus HOM05D002168 ORTHO05D002277 7.0e-20 101.3 80 70.0
CDE07G0416 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 9.2e-20 100.9 87 64.4
AUR62018085 Chenopodium quinoa HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 70.0
AUR62032008 Chenopodium quinoa HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 70.0
Dinv13788 Davidia involucrata HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 70.0
Duzib177G0738 Durio zibethinus HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 70.0
Manes.08G153100 Manihot esculenta HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 68.8
Oeu044206.2 Olea europaea HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 68.8
Sc07g0007450 Simmondsia chinensis HOM05D002168 ORTHO05D002277 9.2e-20 100.9 80 70.0
Aqoxy1G00512 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 1.2e-19 100.5 103 56.3
Ciclev10019242m.g Citrus clementina HOM05D002168 ORTHO05D002277 1.2e-19 100.5 80 68.8
Glyma.16G036100 Glycine max HOM05D002168 ORTHO05D002277 1.2e-19 100.5 80 70.0
TWI32G0897 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 1.2e-19 100.5 80 70.0
Cfa017714 Carpinus fangiana HOM05D002168 ORTHO05D002277 1.6e-19 100.1 80 68.8
COL.COLO4_28638 Corchorus olitorius HOM05D002168 ORTHO05D002277 1.6e-19 100.1 80 70.0
Haze_20409 Corylus avellana HOM05D002168 ORTHO05D002277 1.6e-19 100.1 80 68.8
HanXRQChr14g0453641 Helianthus annuus HOM05D002168 ORTHO05D002277 1.6e-19 100.1 70 71.4
Potri.019G040100 Populus trichocarpa HOM05D002168 ORTHO05D002277 1.6e-19 100.1 80 70.0
Sabra19G0050400 Salix brachista HOM05D002168 ORTHO05D002277 1.6e-19 100.1 80 68.8
Gohir.A11G229100 Gossypium hirsutum HOM05D002168 ORTHO05D002277 2.0e-19 99.8 80 70.0
Gohir.D11G241200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 2.0e-19 99.8 80 70.0
Gorai.007G255300 Gossypium raimondii HOM05D002168 ORTHO05D002277 2.0e-19 99.8 80 70.0
Potri.013G065700 Populus trichocarpa HOM05D002168 ORTHO05D002277 2.0e-19 99.8 80 68.8
vmacro07652 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 2.0e-19 99.8 80 68.8
Sed0008218 Sechium edule HOM05D002168 ORTHO05D002277 2.7e-19 99.4 80 70.0
EL10Ac3g06617 Beta vulgaris HOM05D002168 ORTHO05D002277 3.5e-19 99.0 80 67.5
MD14G1008000 Malus domestica HOM05D002168 ORTHO05D002277 3.5e-19 99.0 82 64.6
TAR633G2049 Trochodendron aralioides HOM05D002168 ORTHO05D002277 3.5e-19 99.0 80 68.8
Aa31LG5G14220 Aethionema arabicum HOM05D002168 ORTHO05D002277 4.6e-19 98.6 80 67.5
FvH4_1g28580 Fragaria vesca HOM05D002168 ORTHO05D002277 4.6e-19 98.6 82 65.9
FAN19G2763 Fragaria x ananassa HOM05D002168 ORTHO05D002277 4.6e-19 98.6 82 65.9
FAN26G0197 Fragaria x ananassa HOM05D002168 ORTHO05D002277 4.6e-19 98.6 82 65.9
MD12G1011400 Malus domestica HOM05D002168 ORTHO05D002277 4.6e-19 98.6 82 64.6
Prupe.7G014600 Prunus persica HOM05D002168 ORTHO05D002277 4.6e-19 98.6 82 64.6
RcHm_v2.0_Chr3g0496111 Rosa chinensis HOM05D002168 ORTHO05D002277 4.6e-19 98.6 82 65.9
ClCG10G015830 Citrullus lanatus HOM05D002168 ORTHO05D002277 6.0e-19 98.2 80 68.8
MELO3C009794.2 Cucumis melo HOM05D002168 ORTHO05D002277 6.0e-19 98.2 80 68.8
CsaV3_3G040620 Cucumis sativus L. HOM05D002168 ORTHO05D002277 6.0e-19 98.2 80 68.8
DCAR_016962 Daucus carota HOM05D002168 ORTHO05D002277 6.0e-19 98.2 80 68.8
HanXRQChr15g0496011 Helianthus annuus HOM05D002168 ORTHO05D002277 7.8e-19 97.8 80 68.8
QL07p017571 Quercus lobata HOM05D002168 ORTHO05D002277 7.8e-19 97.8 80 67.5
Rhsim03G0049500 Rhododendron simsii HOM05D002168 ORTHO05D002277 7.8e-19 97.8 80 67.5
FAN28G1730 Fragaria x ananassa HOM05D002168 ORTHO05D002277 1.0e-18 97.4 82 64.6
PSO339G1487 Papaver somniferum HOM05D002168 ORTHO05D002277 1.0e-18 97.4 80 68.8
PSO384G3331 Papaver somniferum HOM05D002168 ORTHO05D002277 1.0e-18 97.4 80 68.8
Sabra13G0057400 Salix brachista HOM05D002168 ORTHO05D002277 1.0e-18 97.4 80 66.2
GSVIVG01029958001 Vitis vinifera HOM05D002168 ORTHO05D002277 1.0e-18 97.4 80 68.8
C05p63240 Brassica napus HOM05D002168 ORTHO05D002277 1.3e-18 97.1 80 66.2
MBI11_g10545_MAGBIO Magnolia biondii HOM05D002168 ORTHO05D002277 1.3e-18 97.1 80 68.8
Nn2g14555 Nelumbo nucifera HOM05D002168 ORTHO05D002277 1.3e-18 97.1 80 68.8
CAN.G9.1 Capsicum annuum HOM05D002168 ORTHO05D002277 1.7e-18 96.7 80 68.8
Peaxi162Scf01421g00012 Petunia axillaris HOM05D002168 ORTHO05D002277 1.7e-18 96.7 80 68.8
Sopen08g019820 Solanum pennellii HOM05D002168 ORTHO05D002277 1.7e-18 96.7 80 68.8
PGSC0003DMG401007628 Solanum tuberosum HOM05D002168 ORTHO05D002277 1.7e-18 96.7 80 68.8
AL3G13510 Arabidopsis lyrata HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
AT3G03710 Arabidopsis thaliana HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
BcaB04g19361 Brassica carinata HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
BcaC01g04394 Brassica carinata HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
BcaC05g30255 Brassica carinata HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
A03p33360 Brassica napus HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
A05p43660 Brassica napus HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
C03p40600 Brassica napus HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
BolC3t16325H Brassica oleracea HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
BolC5t34986H Brassica oleracea HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
BraA03t12507Z Brassica rapa HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
BraA05t23104Z Brassica rapa HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
Carub.0003s0287 Capsella rubella HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
CARHR077770 Cardamine hirsuta HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
Thhalv10020014m.g Eutrema salsugineum HOM05D002168 ORTHO05D002277 2.3e-18 96.3 80 66.2
Thecc.05G242400 Theobroma cacao HOM05D002168 ORTHO05D002277 3.0e-18 95.9 80 67.5
Ah.04g153620 Amaranthus hybridus HOM05D002168 ORTHO05D002277 5.0e-18 95.1 80 67.5
Lj1A1072T24 Lonicera japonica HOM05D002168 ORTHO05D002277 5.0e-18 95.1 62 79.0
THA.LOC104802884 Tarenaya hassleriana HOM05D002168 ORTHO05D002277 5.0e-18 95.1 80 65.0
Sp3g02680 Schrenkiella parvula HOM05D002168 ORTHO05D002277 8.6e-18 94.4 80 65.0
CiPaw.09G166700 Carya illinoinensis HOM05D002168 ORTHO05D002277 1.5e-17 93.6 80 65.0
Nitab4.5_0005671g0040 Nicotiana tabacum HOM05D002168 ORTHO05D002277 1.5e-17 93.6 80 66.2
ATR0697G078 Amborella trichopoda HOM05D002168 ORTHO05D002277 2.5e-17 92.8 80 65.0
HPP92_014138 Vanilla planifolia HOM05D002168 ORTHO05D002277 2.5e-17 92.8 82 63.4
HPP92_014245 Vanilla planifolia HOM05D002168 ORTHO05D002277 2.5e-17 92.8 82 63.4
Os07g0168000 Oryza sativa ssp. japonica HOM05D002168 ORTHO05D002277 5.6e-17 91.7 80 65.0
HPP92_026508 Vanilla planifolia HOM05D002168 ORTHO05D002277 9.5e-17 90.9 80 63.8
Zm00001eb300920 Zea mays HOM05D002168 ORTHO05D002277 1.2e-16 90.5 80 62.5
unitig_60.g25486 Utricularia gibba HOM05D002168 ORTHO05D002277 2.8e-16 89.4 90 56.7
Mapoly0041s0034 Marchantia polymorpha HOM05D002168 ORTHO05D002277 6.2e-16 88.2 103 51.5
Pp3c6_15550 Physcomitrium patens HOM05D002168 ORTHO05D002277 3.4e-14 82.4 80 58.8
CBR_g5744 Chara braunii HOM05D002168 ORTHO05D002277 2.2e-13 79.7 80 56.2
AagrBONN_evm.TU.Sc2ySwM_340.482 Anthoceros agrestis HOM05D002168 ORTHO05D002277 8.3e-13 77.8 80 53.8
SMO364G0479 Selaginella moellendorffii HOM05D002168 ORTHO05D002277 1.4e-12 77.0 81 51.9
CSS0041842 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 2.4e-12 76.3 64 68.8
MCO09G785 Micromonas commoda HOM05D002168 ORTHO05D002277 3.9e-10 68.9 80 52.5
PRCOL_00002921 Prasinoderma coloniale HOM05D002168 ORTHO05D002277 6.6e-10 68.2 80 48.8
CBR_g30163 Chara braunii HOM05D002168 ORTHO05D002277 7.3e-09 64.7 96 43.8
Cre04.g214501 Chlamydomonas reinhardtii HOM05D002168 ORTHO05D002277 8.1e-08 61.2 80 47.5
Lsat_1_v5_gn_0_46020 Lactuca sativa HOM05D002168 ORTHO05D002277 2.0e-06 56.6 80 43.8


User provided reference genes

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