Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 3.2e-128 461.8 248 100.0
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 2.1e-103 379.4 248 81.9
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 4.2e-96 355.1 246 75.2
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 2.0e-93 346.3 248 75.4
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 1.0e-89 334.0 245 73.1
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 2.3e-89 332.8 239 72.0
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 2.3e-89 332.8 220 77.7
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.9e-89 332.4 250 70.4
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 4.3e-88 328.6 248 70.6
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 7.3e-88 327.8 248 70.6
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 1.2e-87 327.0 241 71.4
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 1.6e-87 326.6 249 70.7
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.6e-87 326.6 245 70.2
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.8e-87 325.9 250 69.6
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 8.0e-87 324.3 243 69.5
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 1.4e-86 323.6 240 69.6
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 3.1e-86 322.4 250 69.6
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 5.2e-86 321.6 253 70.0
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 6.8e-86 321.2 243 70.4
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 5.8e-85 318.2 247 69.2
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 9.8e-85 317.4 245 69.8
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 8.3e-84 314.3 250 67.2
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 1.4e-83 313.5 250 66.8
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 4.1e-83 312.0 212 79.2
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 6.0e-82 308.1 253 66.0
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 6.0e-82 308.1 250 66.8
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 1.0e-81 307.4 242 66.9
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 1.3e-81 307.0 249 66.3
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 1.3e-81 307.0 264 63.3
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 2.3e-81 306.2 258 66.3
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 3.0e-81 305.8 250 65.6
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 5.0e-81 305.1 309 59.5
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 3.3e-80 302.4 247 66.4
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 5.6e-80 301.6 242 69.0
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 9.5e-80 300.8 246 64.6
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 9.5e-80 300.8 246 64.6
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 1.2e-79 300.4 246 65.4
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 1.6e-79 300.1 249 64.3
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 2.8e-79 299.3 246 64.2
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 3.6e-79 298.9 244 68.9
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 4.7e-79 298.5 227 67.8
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 6.2e-79 298.1 250 63.6
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 8.0e-79 297.7 223 70.4
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 3.1e-78 295.8 214 70.1
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 4.0e-78 295.4 209 70.8
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 5.2e-78 295.0 235 66.8
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 5.2e-78 295.0 259 62.2
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 6.8e-78 294.7 255 64.7
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 1.2e-77 293.9 253 63.6
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 5.8e-77 291.6 246 63.0
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 5.8e-77 291.6 262 61.5
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 9.8e-77 290.8 243 66.7
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 1.7e-76 290.0 209 68.9
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 2.2e-76 289.7 219 68.5
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 4.9e-76 288.5 239 64.0
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.4e-75 287.0 247 63.2
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.9e-75 286.6 247 63.6
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 3.2e-75 285.8 235 64.7
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 4.1e-75 285.4 210 71.4
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 1.2e-74 283.9 243 63.0
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 1.2e-74 283.9 243 63.0
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 2.1e-74 283.1 215 68.4
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 4.6e-74 282.0 224 65.2
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 4.6e-74 282.0 251 59.4
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 6.0e-74 281.6 246 62.2
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 6.0e-74 281.6 245 63.7
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 7.8e-74 281.2 276 58.3
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 1.3e-73 280.4 258 60.5
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.3e-72 275.8 206 69.4
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 3.6e-71 272.3 239 64.4
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 4.0e-70 268.9 216 65.7
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 5.2e-70 268.5 214 64.0
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 2.0e-69 266.5 244 59.0
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.4e-69 265.8 205 67.8
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 4.4e-69 265.4 215 63.7
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 5.8e-69 265.0 218 65.6
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 7.5e-69 264.6 271 57.6
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 4.1e-67 258.8 250 57.2
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 3.5e-66 255.8 332 46.7
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 1.0e-65 254.2 217 62.7
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 1.3e-65 253.8 212 59.9
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 3.9e-65 252.3 267 55.8
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 2.5e-64 249.6 256 55.9
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 3.3e-64 249.2 209 63.6
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.3e-64 249.2 228 60.1
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 1.2e-63 247.3 211 60.7
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 2.1e-63 246.5 244 56.6
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 1.4e-62 243.8 237 58.2
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 5.2e-62 241.9 212 59.9
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 2.6e-61 239.6 310 48.1
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 3.4e-61 239.2 239 58.2
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 7.6e-61 238.0 232 58.6
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 1.1e-59 234.2 155 78.1
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 1.4e-59 233.8 202 58.4
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.1e-59 231.5 250 55.2
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 6.0e-58 228.4 320 47.8
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 6.0e-58 228.4 212 56.6
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 2.3e-57 226.5 221 55.7
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 5.1e-57 225.3 177 64.4
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 1.1e-56 224.2 177 63.8
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 1.1e-56 224.2 290 48.3
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 1.5e-56 223.8 208 57.7
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 1.5e-56 223.8 171 67.3
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 2.5e-56 223.0 177 63.3
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 7.3e-56 221.5 183 62.3
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 1.2e-55 220.7 212 56.1
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 6.2e-55 218.4 203 56.2
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 9.0e-54 214.5 207 54.6
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 2.6e-53 213.0 170 64.1
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.9e-52 209.5 170 65.3
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 3.8e-52 209.1 216 55.6
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 4.9e-52 208.8 152 73.0
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 4.9e-52 208.8 164 66.5
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 6.4e-52 208.4 202 56.4
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 6.4e-52 208.4 211 55.9
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 1.4e-51 207.2 169 65.7
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 2.1e-50 203.4 195 57.9
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 2.5e-48 196.4 249 48.2
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 6.7e-41 171.8 139 64.7
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 1.1e-35 154.5 174 47.7
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 3.9e-33 146.0 224 40.6
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 9.6e-32 141.4 119 62.2
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 6.2e-31 138.7 242 40.5
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.0e-28 131.3 221 41.6
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 9.7e-24 114.8 176 36.9
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 1.3e-23 114.4 232 38.4
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 1.6e-23 114.0 93 60.2
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 4.8e-23 112.5 83 68.7
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 3.1e-22 109.8 82 72.0
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 4.1e-22 109.4 126 53.2
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 1.5e-21 107.5 91 62.6
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 6.5e-20 102.1 213 37.6
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 2.5e-19 100.1 106 58.5
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 2.1e-18 97.1 76 67.1
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.3e-17 93.6 167 40.7
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-13 81.3 179 38.0
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 3.4e-13 79.7 59 61.0
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 1.0e-12 78.2 253 27.3
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.3e-12 77.8 82 61.0
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 1.9e-11 73.9 49 71.4
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 3.2e-11 73.2 56 58.9
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 3.3e-08 63.2 89 47.2
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 5.7e-08 62.4 55 60.0
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.8e-07 60.1 55 58.2
FAN15G1616 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.1e-06 58.2 47 57.4
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 1.4e-06 57.8 81 46.9
TWI60G0876 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 9.1e-06 55.1 64 54.7


User provided reference genes

Program Settings