Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 1.6e-115 419.5 211 100.0
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 4.0e-111 404.8 208 98.6
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 7.9e-59 231.1 228 56.6
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 4.9e-53 211.8 247 53.0
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 1.0e-50 204.1 258 47.3
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 1.3e-50 203.8 242 51.2
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 5.3e-47 191.8 230 50.4
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 4.5e-46 188.7 216 50.0
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 5.0e-45 185.3 230 49.6
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 4.2e-44 182.2 231 46.8
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 1.2e-43 180.6 213 49.8
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 2.5e-41 172.9 221 48.9
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 4.3e-41 172.2 240 45.0
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 4.8e-40 168.7 222 45.5
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 4.8e-40 168.7 207 51.7
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 8.2e-40 167.9 205 50.7
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.4e-39 167.2 240 44.6
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 4.1e-39 165.6 219 45.2
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 4.5e-38 162.2 225 43.6
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 5.9e-38 161.8 213 44.6
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 2.2e-37 159.8 223 45.3
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 2.9e-37 159.5 223 45.3
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 1.9e-36 156.8 225 45.3
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 3.2e-36 156.0 213 46.9
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 4.2e-36 155.6 214 44.9
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 2.3e-34 149.8 144 55.6
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 7.4e-33 144.8 233 42.1
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 4.8e-32 142.1 143 52.4
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 6.3e-32 141.7 209 44.0
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.1e-31 141.0 188 46.3
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 1.5e-30 137.1 235 41.7
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 4.5e-30 135.6 211 43.1
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 5.0e-29 132.1 214 43.0
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 5.0e-29 132.1 214 43.0
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 1.2e-27 127.5 211 43.1
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 1.0e-26 124.4 210 43.8
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 1.4e-26 124.0 211 43.6
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 5.1e-26 122.1 210 43.3
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.1e-25 120.9 197 42.1
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 2.2e-24 116.7 221 40.3
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 3.7e-24 115.9 224 38.4
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.4e-23 113.2 225 37.8
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 1.2e-22 110.9 228 39.5
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 2.0e-22 110.2 225 38.2
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 3.5e-22 109.4 228 39.0
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 5.9e-22 108.6 231 33.3
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 2.9e-21 106.3 215 36.7
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 2.9e-21 106.3 214 35.5
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 5.0e-21 105.5 188 43.1
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 6.5e-21 105.1 239 35.6
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 8.5e-21 104.8 213 36.6
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 8.5e-21 104.8 219 39.3
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 8.5e-21 104.8 219 39.3
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 4.2e-20 102.4 241 35.3
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 2.7e-19 99.8 165 44.2
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 2.7e-19 99.8 118 45.8
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 1.4e-18 97.4 210 37.6
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 5.7e-17 92.0 225 36.4
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.8e-15 87.0 211 35.1
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 4.1e-15 85.9 132 40.9
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.2e-14 84.3 211 35.1
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 5.9e-14 82.0 209 33.5
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 5.9e-14 82.0 219 32.0
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 1.0e-13 81.3 139 41.7
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.0e-13 81.3 225 32.9
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.3e-13 80.9 82 57.3
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 1.2e-11 74.3 229 31.4
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 2.7e-11 73.2 229 30.1
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 4.7e-11 72.4 185 33.5
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 6.1e-11 72.0 233 32.2
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 2.3e-10 70.1 196 33.7
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 3.0e-10 69.7 224 30.4
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 4.0e-10 69.3 228 32.5
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.0e-10 69.3 229 31.0
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 5.2e-10 68.9 240 31.7
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 5.2e-10 68.9 225 32.4
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 5.2e-10 68.9 225 32.4
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 6.8e-10 68.6 233 30.9
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 1.2e-09 67.8 240 30.8
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.5e-09 67.4 128 39.1
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.5e-09 67.4 215 31.6
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 1.5e-09 67.4 91 51.6
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 2.0e-09 67.0 252 29.4
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 1.3e-08 64.3 138 36.2
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 2.2e-08 63.5 59 55.9
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 6.3e-08 62.0 137 35.0
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 6.3e-08 62.0 139 35.3
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 1.1e-07 61.2 133 36.8
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 1.1e-07 61.2 211 29.4
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 1.2e-06 57.8 132 35.6
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 1.6e-06 57.4 131 38.2
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 2.0e-06 57.0 136 36.0
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 3.5e-06 56.2 137 33.6
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 7.7e-06 55.1 198 30.8


User provided reference genes

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