Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 7.9e-280 966.5 487 100.0
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 6.6e-202 707.6 478 77.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 1.4e-196 689.9 468 75.6
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 1.1e-191 673.7 446 79.1
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 1.5e-182 643.3 464 71.8
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 2.5e-172 609.4 514 65.2
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 5.5e-172 608.2 507 65.3
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.2e-171 607.1 498 67.3
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 6.0e-171 604.7 497 67.2
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 6.0e-171 604.7 497 67.4
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.0e-170 604.0 463 69.8
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.3e-170 602.8 458 70.7
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.3e-170 602.8 458 70.7
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 3.9e-170 602.1 414 76.6
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 6.7e-170 601.3 528 63.1
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 7.4e-169 597.8 504 64.9
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 4.1e-167 592.0 514 64.8
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.5e-166 590.1 462 69.5
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 5.0e-165 585.1 502 64.5
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 3.6e-163 578.9 507 62.9
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 6.1e-163 578.2 446 70.0
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.3e-162 577.0 528 59.8
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.8e-162 576.6 449 69.9
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.8e-162 576.6 525 60.6
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 2.3e-162 576.2 409 74.3
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 3.9e-162 575.5 455 68.6
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 3.9e-162 575.5 451 68.5
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.1e-161 573.9 485 65.8
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.9e-161 573.2 467 67.2
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 2.5e-161 572.8 411 74.0
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 3.7e-160 568.9 506 62.3
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.1e-159 567.4 560 56.2
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 5.3e-159 565.1 521 61.2
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 2.0e-158 563.1 401 74.3
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.6e-158 562.8 471 64.8
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.6e-158 562.8 543 57.6
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 7.7e-158 561.2 486 65.0
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 7.7e-158 561.2 512 61.3
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.0e-157 560.8 560 56.2
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 1.7e-157 560.1 569 55.5
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 3.8e-157 558.9 411 72.7
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 1.1e-156 557.4 444 68.2
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 5.5e-156 555.1 462 65.6
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.2e-155 553.9 543 57.6
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.1e-155 553.1 491 62.5
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 3.6e-155 552.4 539 58.1
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 6.1e-155 551.6 531 60.3
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.4e-154 550.4 461 66.2
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 3.0e-154 549.3 453 65.3
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 5.1e-154 548.5 463 64.1
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 2.6e-153 546.2 459 66.2
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 9.7e-153 544.3 496 61.7
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.2e-152 543.1 576 53.5
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.8e-152 542.7 489 61.6
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 4.1e-151 538.9 381 71.7
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 4.1e-151 538.9 527 59.2
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 2.0e-150 536.6 352 77.3
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.3e-149 533.9 576 52.6
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 1.3e-149 533.9 458 64.8
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.9e-148 530.0 344 75.6
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 4.7e-147 525.4 342 78.9
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 8.8e-146 521.2 326 81.0
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 1.5e-145 520.4 411 66.9
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 2.0e-145 520.0 398 69.1
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 7.4e-145 518.1 334 79.0
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.1e-140 504.2 452 61.7
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 4.7e-139 498.8 456 59.2
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 1.0e-138 497.7 317 78.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 3.0e-138 496.1 408 64.2
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 6.7e-138 495.0 442 62.4
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 5.7e-137 491.9 426 61.7
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 5.7e-137 491.9 312 78.5
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.7e-136 490.3 409 64.1
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.2e-136 490.0 504 54.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 4.8e-136 488.8 417 63.5
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 8.2e-136 488.0 517 54.9
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.4e-135 487.3 402 64.4
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 5.9e-134 481.9 341 73.0
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.3e-133 480.7 421 63.4
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.3e-133 480.7 421 63.4
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 3.8e-133 479.2 516 54.7
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 5.0e-133 478.8 434 61.8
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 7.2e-132 474.9 421 62.9
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 9.4e-132 474.6 423 61.2
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.2e-131 474.2 359 70.2
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.2e-131 474.2 354 71.2
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 8.8e-130 468.0 519 53.8
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 1.2e-129 467.6 352 66.2
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 7.7e-126 454.9 457 56.2
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 2.2e-125 453.4 410 60.0
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 3.6e-123 446.0 284 79.9
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 3.6e-123 446.0 448 56.9
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 7.0e-119 431.8 498 53.6
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.7e-117 427.2 283 78.1
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.7e-117 427.2 283 78.1
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.9e-116 423.7 283 77.4
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 3.5e-78 296.6 343 48.1
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 1.6e-75 287.7 175 81.1
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.1e-74 285.0 286 52.1
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 3.1e-74 283.5 333 47.4
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 4.6e-70 269.6 214 68.7
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 1.2e-65 255.0 188 69.7
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 3.8e-64 250.0 277 49.8
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 6.5e-56 222.6 209 59.3
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 5.1e-53 213.0 504 32.5
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.9e-52 211.1 287 44.6
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 4.8e-51 206.5 299 41.1
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 4.8e-51 206.5 152 72.4
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 3.1e-50 203.8 317 40.7
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 1.1e-47 195.3 285 42.1
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 1.4e-37 161.8 289 41.2
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.1e-36 158.7 148 53.4
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 2.6e-33 147.5 192 47.9
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 9.4e-23 112.5 83 65.1
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 3.0e-21 107.5 81 66.7
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 7.7e-17 92.8 83 54.2
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 7.7e-17 92.8 83 54.2
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 1.3e-16 92.0 83 53.0
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 4.7e-14 83.6 73 54.8
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 8.0e-14 82.8 71 54.9
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.8e-13 81.6 239 30.1
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 2.3e-13 81.3 73 53.4
Dinv40374 Davidia involucrata HOM05D032807 ORTHO05D181779 3.0e-13 80.9 110 43.6
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.2e-12 79.0 56 66.1
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.2e-12 79.0 56 66.1
Dinv01186 Davidia involucrata HOM05D032807 ORTHO05D008555 2.6e-12 77.8 112 42.9
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 1.7e-11 75.1 79 55.7
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 2.2e-11 74.7 63 57.1
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 5.0e-08 63.5 49 67.3
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.5e-07 62.0 184 33.2
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 1.2e-06 58.9 186 32.3
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 8.0e-06 56.2 183 31.1


User provided reference genes

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