Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 0.0e+00 1091.3 536 100.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.6e-296 1020.0 536 93.1
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.5e-265 917.9 538 86.2
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.2e-242 840.5 588 76.0
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 9.5e-218 760.4 536 70.0
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.8e-217 758.8 533 70.4
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.8e-216 756.1 537 70.6
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.1e-200 703.7 533 64.9
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 2.2e-190 669.5 539 61.2
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.4e-181 640.2 531 59.9
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.6e-180 636.7 537 59.2
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.5e-178 629.4 531 59.1
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.3e-177 627.1 533 58.0
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.1e-176 622.5 535 57.9
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.5e-175 620.2 532 57.5
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 4.5e-175 618.6 531 60.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 5.4e-173 611.7 533 58.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.3e-171 607.1 531 58.8
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.8e-171 606.7 542 56.1
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.6e-167 592.8 546 55.5
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.1e-165 587.4 542 55.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 5.5e-165 585.1 529 55.0
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.3e-163 580.5 533 56.1
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 7.4e-162 574.7 529 54.8
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.8e-161 572.8 541 54.0
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.1e-160 570.9 534 54.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.2e-159 567.4 530 51.5
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.6e-159 566.2 542 53.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.5e-159 565.5 535 53.6
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 5.8e-159 565.1 535 54.0
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 6.5e-158 561.6 537 53.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.1e-157 560.8 529 53.3
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 3.2e-157 559.3 536 51.9
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 1.2e-156 557.4 538 53.2
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.2e-156 557.4 540 54.1
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.7e-156 556.2 533 53.1
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 4.6e-156 555.4 531 53.3
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 6.0e-156 555.1 539 52.7
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.1e-154 550.8 539 53.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.5e-154 550.4 529 52.9
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 5.7e-154 548.5 530 54.3
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 7.4e-154 548.1 537 52.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 4.8e-153 545.4 545 51.6
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.8e-152 543.5 546 52.7
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 2.0e-151 540.0 529 51.2
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 5.0e-150 535.4 533 52.9
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 6.5e-150 535.0 537 50.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 8.5e-150 534.6 532 51.3
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 9.3e-149 531.2 531 50.8
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 9.3e-149 531.2 545 50.5
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 9.3e-149 531.2 533 52.7
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 2.1e-148 530.0 535 50.7
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.1e-148 530.0 533 51.0
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 2.7e-148 529.6 533 52.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.8e-147 526.9 534 51.9
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.1e-146 524.2 545 49.4
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 4.3e-146 522.3 536 52.4
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 9.7e-146 521.2 533 50.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 4.8e-145 518.8 534 50.7
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.3e-145 518.5 534 50.6
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 8.2e-145 518.1 442 58.8
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.1e-144 517.7 544 49.1
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.4e-144 517.3 542 50.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.3e-144 515.4 531 50.7
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.5e-143 513.8 536 49.1
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.7e-142 510.4 532 51.5
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 2.2e-142 510.0 533 52.5
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 3.8e-142 509.2 551 48.8
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 8.5e-142 508.1 554 48.2
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.2e-141 505.0 526 50.0
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-140 503.8 526 49.8
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.8e-139 500.4 533 49.3
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 5.1e-139 498.8 533 49.3
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.6e-138 496.5 533 51.0
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 4.8e-137 492.3 533 49.2
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 8.2e-137 491.5 541 49.0
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.8e-136 490.3 529 50.5
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 1.8e-136 490.3 532 47.2
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.2e-133 479.6 530 50.4
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 2.7e-132 476.5 443 55.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.4e-128 464.2 551 46.6
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 7.0e-128 461.8 536 48.1
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 9.1e-128 461.5 515 49.5
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.0e-127 460.3 552 46.6
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 5.0e-126 455.7 539 45.5
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.9e-125 453.8 541 46.6
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.2e-124 451.1 534 45.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 6.7e-123 445.3 533 44.7
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.2e-122 444.5 542 46.5
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.2e-121 440.3 541 45.3
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.8e-120 437.2 419 53.9
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 6.5e-118 428.7 554 43.0
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 4.7e-116 422.5 474 46.0
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.0e-115 421.4 535 43.0
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 4.4e-114 416.0 538 43.5
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.2e-108 397.9 487 46.4
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 8.0e-108 395.2 530 41.3
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 4.0e-107 392.9 530 40.6
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 4.0e-107 392.9 530 40.6
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 4.0e-107 392.9 530 40.6
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 6.8e-107 392.1 533 41.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.4e-106 389.8 530 39.6
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.7e-105 387.5 330 60.6
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 5.0e-102 375.9 546 41.2
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 7.8e-95 352.1 511 39.9
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.9e-88 330.9 581 37.7
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.5e-87 326.6 617 34.8
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 4.9e-81 306.2 322 51.9
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.4e-80 303.9 325 52.3
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 4.3e-77 293.1 280 52.9
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 1.6e-76 291.2 300 48.3
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-71 275.0 282 49.6
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 5.6e-69 266.2 416 42.5
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 7.3e-69 265.8 228 53.5
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 6.0e-63 246.1 574 32.1
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.3e-57 228.4 557 31.1
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 1.9e-45 188.0 555 28.5
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 4.8e-44 183.3 297 36.0
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.8e-43 181.4 387 31.8
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 1.4e-40 171.8 560 26.2
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.9e-37 161.4 209 44.0
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 3.7e-36 157.1 319 31.7
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 9.0e-35 152.5 196 38.8
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.4e-30 138.7 228 38.6
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.4e-27 128.6 127 50.4
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 2.6e-26 124.4 122 50.0
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 9.4e-24 115.9 130 43.8
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-22 112.1 293 28.0
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.7e-20 105.1 212 34.4
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.6e-18 97.8 203 35.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-16 91.7 104 42.3
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.1e-15 88.2 91 41.8
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 8.0e-15 86.3 155 38.7
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-14 85.5 185 33.0
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-14 84.3 187 33.2
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.7e-12 78.6 69 59.4
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 3.1e-11 74.3 181 28.7
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.3e-11 73.6 86 40.7
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-09 68.9 161 34.2
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-08 65.1 124 30.6
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.2e-08 64.3 62 50.0
Oeu008166.1 Olea europaea HOM05D001573 ORTHO05D001660 5.5e-08 63.5 301 22.9
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.2e-08 63.2 62 45.2
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.2e-07 62.4 61 42.6
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.6e-07 60.8 65 43.1
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 1.8e-06 58.5 353 21.0
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-06 57.8 60 41.7
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 3.0e-06 57.8 272 21.3


User provided reference genes

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