Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 0.0e+00 1147.1 603 100.0
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.6e-242 842.8 617 74.6
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.2e-237 826.6 603 74.1
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 2.4e-230 802.4 616 71.1
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.3e-223 780.0 618 69.3
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.0e-220 768.8 602 71.1
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 7.4e-219 764.2 595 70.1
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 2.1e-218 762.7 612 69.9
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 9.0e-217 757.3 618 69.6
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 7.6e-216 754.2 618 67.8
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.1e-214 750.4 618 67.0
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.2e-214 748.8 600 68.7
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.6e-213 746.5 618 66.7
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 6.7e-212 741.1 618 66.3
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.5e-211 739.2 619 64.9
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.3e-210 736.9 630 64.9
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 1.5e-208 729.9 627 65.6
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 4.5e-208 728.4 618 65.7
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 2.9e-207 725.7 620 65.0
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.6e-205 719.9 628 63.9
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.6e-205 718.4 629 64.2
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.4e-204 716.8 619 64.8
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 8.8e-204 714.1 653 62.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.1e-203 713.8 631 65.0
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 2.0e-203 713.0 615 64.6
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.5e-203 712.6 631 64.3
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 3.3e-203 712.2 628 63.7
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 9.7e-203 710.7 620 63.9
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.4e-201 706.8 616 64.4
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.8e-201 706.4 616 63.8
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-200 703.0 630 62.2
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.5e-200 701.8 629 64.9
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.0e-199 700.7 600 62.7
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.7e-199 699.9 637 62.6
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.7e-199 699.9 616 62.8
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.9e-199 699.1 618 63.3
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 8.5e-199 697.6 615 62.0
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.4e-198 696.8 603 64.7
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.7e-197 692.6 618 64.6
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.8e-196 689.9 617 64.2
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 3.9e-196 688.7 619 63.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 8.8e-196 687.6 617 63.2
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.3e-195 685.6 621 62.3
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.8e-194 681.8 649 59.0
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.3e-194 681.4 659 59.3
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 8.2e-194 681.0 531 70.4
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.2e-192 677.2 651 60.4
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 2.9e-191 672.5 620 62.3
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 8.5e-191 671.0 597 63.7
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.1e-190 670.6 598 62.9
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 4.2e-190 668.7 594 64.0
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 7.2e-190 667.9 617 61.9
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.6e-189 666.8 566 65.0
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.0e-188 664.1 606 61.2
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 5.2e-188 661.8 658 58.2
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 5.7e-187 658.3 615 59.7
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 8.2e-186 654.4 601 61.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.1e-185 654.1 622 61.6
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.4e-185 653.7 621 61.0
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.9e-183 646.0 584 61.0
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.2e-182 642.5 635 59.2
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 7.2e-182 641.3 681 55.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.4e-182 641.0 562 62.3
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 3.0e-180 636.0 617 59.8
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 4.0e-180 635.6 540 64.6
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.5e-179 633.6 623 58.9
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 2.8e-178 629.4 618 58.6
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.7e-176 622.9 540 63.3
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.7e-175 620.2 631 58.3
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 2.9e-175 619.4 550 63.5
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.8e-175 619.0 620 58.2
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 8.5e-175 617.8 638 56.3
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.5e-174 616.3 634 55.0
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 2.5e-174 616.3 608 58.1
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.2e-174 615.5 619 58.6
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 7.2e-174 614.8 635 60.3
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 4.0e-172 609.0 622 57.6
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 6.8e-172 608.2 616 57.3
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 5.7e-171 605.1 621 57.5
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 9.8e-171 604.4 622 57.7
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 6.3e-170 601.7 626 55.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 6.3e-170 601.7 622 57.1
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 8.3e-170 601.3 619 55.4
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 8.3e-170 601.3 622 57.2
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.5e-168 595.9 636 56.0
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 7.7e-168 594.7 621 55.7
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 2.3e-167 593.2 621 55.6
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 3.8e-167 592.4 616 55.8
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.1e-166 590.9 656 53.5
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-166 589.0 620 56.3
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.0e-164 582.8 615 55.3
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 4.0e-164 582.4 529 61.8
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 7.5e-163 578.2 616 54.9
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.1e-161 574.3 598 57.2
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 4.1e-161 572.4 613 56.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.7e-159 567.0 624 54.6
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 3.9e-159 565.8 626 54.6
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 3.3e-158 562.8 498 61.4
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 2.9e-154 549.7 562 60.3
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 7.8e-152 541.6 543 56.0
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.5e-150 537.3 618 52.8
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 2.6e-147 526.6 619 52.0
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 6.0e-144 515.4 548 55.8
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 1.6e-141 507.3 519 58.2
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.6e-141 507.3 592 53.5
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.0e-135 488.0 398 68.6
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.6e-134 481.5 390 67.4
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-128 464.5 505 54.3
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-126 457.6 586 48.8
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 4.0e-124 449.5 518 51.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.2e-122 443.7 400 64.0
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 2.1e-120 437.2 310 73.5
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.3e-117 427.9 310 71.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.0e-116 421.8 291 76.6
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.8e-111 407.5 561 48.3
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 6.0e-104 382.5 307 65.5
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-91 340.1 388 53.4
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 5.0e-82 309.7 272 62.1
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.8e-77 293.1 274 58.8
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 6.3e-77 292.7 363 51.2
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.4e-76 291.6 661 32.8
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.4e-76 290.8 320 55.3
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 3.8e-74 283.5 277 59.2
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-68 264.6 284 56.0
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 7.0e-68 262.7 194 71.1
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 7.0e-68 262.7 281 54.8
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.7e-67 260.8 271 54.2
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.0e-66 258.8 286 54.2
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 3.2e-65 253.8 195 69.7
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 2.3e-63 247.7 275 52.0
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 9.8e-62 242.3 512 35.2
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.9e-58 230.7 274 52.9
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.9e-58 230.7 236 53.0
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.4e-55 221.9 241 52.7
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 2.8e-53 214.2 225 51.6
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.6e-51 208.4 125 90.4
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 2.7e-51 207.6 274 47.4
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.7e-51 206.1 151 74.2
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.6e-48 198.4 274 50.0
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.7e-45 187.2 143 72.0
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.0e-42 176.8 211 53.6
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 8.6e-42 176.0 313 37.7
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.9e-41 174.9 268 41.8
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-40 170.6 255 44.3
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.7e-40 170.2 165 57.6
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.9e-37 160.2 209 46.4
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.6e-32 144.1 205 44.9
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 3.6e-32 144.1 115 69.6
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-31 142.1 107 67.3
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.8e-31 141.7 158 52.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 2.9e-29 134.4 174 46.6
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 4.9e-29 133.7 105 69.5
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 8.3e-29 132.9 361 31.6
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 1.4e-28 132.1 113 62.8
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 2.7e-27 127.9 292 34.9
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.7e-27 127.9 277 33.6
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.7e-26 125.2 77 79.2
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 6.2e-24 116.7 113 56.6
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 4.4e-22 110.5 87 71.3
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.4e-20 105.5 107 56.1
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-18 98.6 77 67.5
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.5e-17 95.5 51 94.1
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.5e-17 95.5 51 94.1
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 7.3e-17 93.2 51 94.1
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 2.8e-16 91.3 83 61.4
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.9e-13 81.3 124 41.9
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 4.6e-11 73.9 250 28.0
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 3.9e-10 70.9 95 50.5
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 6.6e-10 70.1 50 66.0
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 8.7e-10 69.7 141 41.8
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 2.5e-09 68.2 52 63.5
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 2.5e-09 68.2 93 51.6
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.6e-09 66.2 62 50.0
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.6e-09 66.2 64 48.4
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.6e-09 66.2 62 50.0
MBI16_g19191_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.6e-08 64.3 62 48.4
MBI13_g14579_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.1e-07 62.8 62 48.4
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 4.0e-07 60.8 56 64.3
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 1.2e-06 59.3 54 57.4
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 1.5e-06 58.9 32 90.6
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 4.5e-06 57.4 32 87.5
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 5.8e-06 57.0 65 44.6
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 5.8e-06 57.0 65 44.6


User provided reference genes

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