Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007166 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 5.9e-38 160.2 73 100.0
CSS0005843 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 9.4e-28 126.3 70 82.9
CSS0047656 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 9.4e-28 126.3 70 82.9
Actinidia00440 Actinidia chinensis HOM05D001394 ORTHO05D001237 8.8e-26 119.8 70 74.3
Rhsim05G0084500 Rhododendron simsii HOM05D001394 ORTHO05D001237 1.5e-25 119.0 70 75.7
CiPaw.05G006700 Carya illinoinensis HOM05D001394 ORTHO05D001237 2.6e-25 118.2 69 76.8
Duzib052G0202 Durio zibethinus HOM05D001394 ORTHO05D001237 2.6e-25 118.2 70 77.1
Lj9C358T2 Lonicera japonica HOM05D001394 ORTHO05D001237 2.6e-25 118.2 70 78.6
Actinidia27957 Actinidia chinensis HOM05D001394 ORTHO05D001237 5.7e-25 117.1 70 75.7
Duzib248G0165 Durio zibethinus HOM05D001394 ORTHO05D001237 2.2e-24 115.2 70 74.3
Cfa004523 Carpinus fangiana HOM05D000983 ORTHO05D001922 3.7e-24 114.4 69 73.9
Thecc.02G100900 Theobroma cacao HOM05D001394 ORTHO05D001237 6.3e-24 113.6 69 76.8
vmacro19501 Vaccinium macrocarpon HOM05D001394 ORTHO05D001237 1.8e-23 112.1 70 71.4
Nn1g00045 Nelumbo nucifera HOM05D001394 ORTHO05D001237 7.0e-23 110.2 70 74.3
Nn1g04859 Nelumbo nucifera HOM05D001394 ORTHO05D001237 7.0e-23 110.2 70 74.3
Gohir.A13G040300 Gossypium hirsutum HOM05D001394 ORTHO05D001237 1.2e-22 109.4 70 72.9
Nn5g30318 Nelumbo nucifera HOM05D001394 ORTHO05D001237 4.5e-22 107.5 70 70.0
TAR625G0201 Trochodendron aralioides HOM05D001394 ORTHO05D001237 7.7e-22 106.7 70 68.6
Gohir.D12G024700 Gossypium hirsutum HOM05D001394 ORTHO05D001237 1.0e-21 106.3 70 67.1
Gorai.008G025000 Gossypium raimondii HOM05D001394 ORTHO05D001237 1.0e-21 106.3 70 67.1
CiPaw.06G172400 Carya illinoinensis HOM05D001394 ORTHO05D001237 1.3e-21 105.9 69 72.5
Haze_10082 Corylus avellana HOM05D001394 ORTHO05D001237 1.7e-21 105.5 69 69.6
Gohir.D13G039000 Gossypium hirsutum HOM05D001394 ORTHO05D001237 2.3e-21 105.1 70 70.0
Gorai.013G043800 Gossypium raimondii HOM05D001394 ORTHO05D001237 2.3e-21 105.1 70 70.0
Gohir.A12G024100 Gossypium hirsutum HOM05D001394 ORTHO05D001237 2.9e-21 104.8 70 65.7
Manes.07G077800 Manihot esculenta HOM05D001394 ORTHO05D001237 3.8e-21 104.4 70 68.6
MSTRG.20156 Avicennia marina HOM05D001394 ORTHO05D001237 5.0e-21 104.0 70 67.1
PGR142G3869 Punica granatum HOM05D001394 ORTHO05D001237 8.6e-21 103.2 70 67.1
Sc18g0004080 Simmondsia chinensis HOM05D001394 ORTHO05D001237 8.6e-21 103.2 69 69.6
ClCG02G005920 Citrullus lanatus HOM05D001394 ORTHO05D001237 1.1e-20 102.8 70 62.9
Prupe.8G125600 Prunus persica HOM05D001394 ORTHO05D001237 1.1e-20 102.8 69 63.8
Hund00337 Selenicereus undatus HOM05D001394 ORTHO05D001237 1.5e-20 102.4 70 64.3
GSVIVG01031739001 Vitis vinifera HOM05D001394 ORTHO05D001237 1.9e-20 102.1 69 69.6
QL11p035890 Quercus lobata HOM05D001394 ORTHO05D001237 2.5e-20 101.7 70 68.6
MELO3C018448.2 Cucumis melo HOM05D001394 ORTHO05D001237 3.3e-20 101.3 70 61.4
MD05G1081300 Malus domestica HOM05D001394 ORTHO05D001237 3.3e-20 101.3 69 65.2
EL10Ac9g21103 Beta vulgaris HOM05D001394 ORTHO05D001237 4.2e-20 100.9 70 68.6
Eucgr.I01150 Eucalyptus grandis HOM05D001394 ORTHO05D001237 4.2e-20 100.9 70 68.6
CsaV3_7G008620 Cucumis sativus L. HOM05D001394 ORTHO05D001237 7.2e-20 100.1 70 60.0
Eucgr.G01439 Eucalyptus grandis HOM05D001394 ORTHO05D001237 7.2e-20 100.1 70 70.0
Lsat_1_v5_gn_9_109860 Lactuca sativa HOM05D001394 ORTHO05D001237 7.2e-20 100.1 70 62.9
Dinv42158 Davidia involucrata HOM05D001394 ORTHO05D001237 9.5e-20 99.8 70 64.3
Manes.10G071500 Manihot esculenta HOM05D001394 ORTHO05D001237 1.2e-19 99.4 70 67.1
Sed0021733 Sechium edule HOM05D001394 ORTHO05D001237 1.2e-19 99.4 70 60.0
Lj5A209G71 Lonicera japonica HOM05D001394 ORTHO05D001237 1.6e-19 99.0 60 73.3
Oeu010589.1 Olea europaea HOM05D001394 ORTHO05D001237 1.6e-19 99.0 70 65.7
MD00G1035400 Malus domestica HOM05D001394 ORTHO05D001237 2.8e-19 98.2 69 62.3
MSTRG.16744 Avicennia marina HOM05D001394 ORTHO05D001237 3.6e-19 97.8 70 64.3
Hund06175 Selenicereus undatus HOM05D001394 ORTHO05D001237 3.6e-19 97.8 69 65.2
Atru.chr5.2700 Acer truncatum HOM05D001394 ORTHO05D001237 4.7e-19 97.4 69 63.8
Nitab4.5_0002097g0020 Nicotiana tabacum HOM05D001394 ORTHO05D001237 4.7e-19 97.4 69 65.2
Oeu025578.1 Olea europaea HOM05D001394 ORTHO05D001237 4.7e-19 97.4 70 67.1
FAN15G1346 Fragaria x ananassa HOM05D000983 ORTHO05D001922 6.1e-19 97.1 69 63.8
FAN20G2256 Fragaria x ananassa HOM05D000983 ORTHO05D001237 6.1e-19 97.1 69 63.8
Nitab4.5_0005249g0070 Nicotiana tabacum HOM05D001394 ORTHO05D001237 6.1e-19 97.1 69 65.2
Ciclev10028986m.g Citrus clementina HOM05D001394 ORTHO05D001237 8.0e-19 96.7 70 65.7
Migut.N01187 Erythranthe guttata HOM05D001394 ORTHO05D001237 8.0e-19 96.7 70 62.9
TWI75G0123 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 1.0e-18 96.3 70 64.3
TWI79G1474 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 1.8e-18 95.5 70 62.9
CARHR094660 Cardamine hirsuta HOM05D001394 ORTHO05D001237 2.3e-18 95.1 70 58.6
Eucgr.G01442 Eucalyptus grandis HOM05D001394 ORTHO05D001237 2.3e-18 95.1 70 67.1
CANSAT25G3592 Cannabis sativa HOM05D001394 ORTHO05D001237 3.0e-18 94.7 70 61.4
Migut.J00253 Erythranthe guttata HOM05D001394 ORTHO05D001237 3.0e-18 94.7 70 62.9
FvH4_2g06020 Fragaria vesca HOM05D001394 ORTHO05D001237 3.0e-18 94.7 69 62.3
FAN24G2118 Fragaria x ananassa HOM05D000983 ORTHO05D001237 3.0e-18 94.7 69 62.3
AUR62038326 Chenopodium quinoa HOM05D001394 ORTHO05D001237 4.0e-18 94.4 72 62.5
ATR1102G047 Amborella trichopoda HOM05D001394 ORTHO05D001237 5.2e-18 94.0 72 58.3
Cc02_g18800 Coffea canephora HOM05D001394 ORTHO05D001237 5.2e-18 94.0 70 61.4
FAN27G0824 Fragaria x ananassa HOM05D000983 ORTHO05D001922 6.8e-18 93.6 69 60.9
TWI31G0875 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 6.8e-18 93.6 70 64.3
Nitab4.5_0000435g0070 Nicotiana tabacum HOM05D001394 ORTHO05D001237 8.9e-18 93.2 70 62.9
Peaxi162Scf00152g00020 Petunia axillaris HOM05D001394 ORTHO05D001237 8.9e-18 93.2 70 64.3
AL3G32660 Arabidopsis lyrata HOM05D001394 ORTHO05D001237 1.2e-17 92.8 71 59.2
ECA240G1868 Erigeron canadensis HOM05D001394 ORTHO05D001237 1.5e-17 92.4 70 61.4
RcHm_v2.0_Chr6g0257331 Rosa chinensis HOM05D001394 ORTHO05D001237 2.0e-17 92.0 70 62.9
PGSC0003DMG400025796 Solanum tuberosum HOM05D001394 ORTHO05D001237 2.0e-17 92.0 69 62.3
Solyc01g108230.3 Solanum lycopersicum HOM05D001394 ORTHO05D001237 2.6e-17 91.7 69 60.9
Sopen01g050450 Solanum pennellii HOM05D001394 ORTHO05D001237 2.6e-17 91.7 69 60.9
Oeu006953.2 Olea europaea HOM05D001394 ORTHO05D001237 3.4e-17 91.3 70 64.3
Sp3g17340 Schrenkiella parvula HOM05D001394 ORTHO05D001237 3.4e-17 91.3 70 57.1
Nitab4.5_0004666g0010 Nicotiana tabacum HOM05D001394 ORTHO05D001237 4.4e-17 90.9 70 61.4
Thhalv10021239m.g Eutrema salsugineum HOM05D001394 ORTHO05D001237 5.7e-17 90.5 70 55.7
MSTRG.27726 Avicennia marina HOM05D001394 ORTHO05D001237 7.5e-17 90.1 70 61.4
Carub.0001s3888 Capsella rubella HOM05D001394 ORTHO05D001237 7.5e-17 90.1 70 58.6
THA.LOC104803454 Tarenaya hassleriana HOM05D001394 ORTHO05D001237 7.5e-17 90.1 70 57.1
COL.COLO4_32655 Corchorus olitorius HOM05D001394 ORTHO05D001237 9.8e-17 89.7 54 74.1
AT3G19260 Arabidopsis thaliana HOM05D001394 ORTHO05D001237 1.3e-16 89.4 71 57.7
HanXRQChr09g0250401 Helianthus annuus HOM05D001394 ORTHO05D001237 1.3e-16 89.4 70 57.1
Cpa.g.sc62.10 Carica papaya HOM05D001394 ORTHO05D001237 2.2e-16 88.6 70 58.6
PSO541G4468 Papaver somniferum HOM05D001394 ORTHO05D001237 2.2e-16 88.6 70 52.9
PSO675G1618 Papaver somniferum HOM05D001394 ORTHO05D001237 2.2e-16 88.6 70 52.9
Potri.009G101800 Populus trichocarpa HOM05D001394 ORTHO05D001237 2.8e-16 88.2 72 62.5
Sp1g36520 Schrenkiella parvula HOM05D001394 ORTHO05D001237 4.9e-16 87.4 70 58.6
Aqoxy5G01237 Aquilegia oxysepala HOM05D001394 ORTHO05D001237 8.3e-16 86.7 70 61.4
Potri.004G141000 Populus trichocarpa HOM05D001394 ORTHO05D001237 8.3e-16 86.7 71 63.4
CARHR039730 Cardamine hirsuta HOM05D001394 ORTHO05D001237 1.1e-15 86.3 70 58.6
BcaB04g19032 Brassica carinata HOM05D001394 ORTHO05D001237 1.4e-15 85.9 71 53.5
CAN.G1041.12 Capsicum annuum HOM05D001394 ORTHO05D001237 1.4e-15 85.9 69 59.4
SGA_v2.0_scaffold13G06596 Striga asiatica HOM05D001394 ORTHO05D001237 1.4e-15 85.9 69 56.5
Aa31LG10G4350 Aethionema arabicum HOM05D001394 ORTHO05D001237 1.8e-15 85.5 70 54.3
Carub.0003s1909 Capsella rubella HOM05D001394 ORTHO05D001237 2.4e-15 85.1 71 54.9
CDE04G2076 Ceratophyllum demersum HOM05D001394 ORTHO05D001237 2.4e-15 85.1 69 59.4
Migut.B00349 Erythranthe guttata HOM05D001394 ORTHO05D001237 2.4e-15 85.1 71 56.3
SalBow3G1259 Salvia bowleyana HOM05D001394 ORTHO05D001237 2.4e-15 85.1 69 56.5
Migut.B00348 Erythranthe guttata HOM05D001394 ORTHO05D001237 5.4e-15 84.0 70 60.0
Prupe.8G125400 Prunus persica HOM05D001394 ORTHO05D001237 1.2e-14 82.8 51 70.6
Glyma.02G132400 Glycine max HOM05D001394 ORTHO05D001237 1.6e-14 82.4 70 57.1
Lj4g0009983 Lotus japonicus HOM05D001394 ORTHO05D001237 1.6e-14 82.4 70 54.3
BcaC01g03640 Brassica carinata HOM05D001394 ORTHO05D001237 2.0e-14 82.0 71 52.1
A03p41130 Brassica napus HOM05D001394 ORTHO05D001237 2.0e-14 82.0 71 52.1
C03p50210 Brassica napus HOM05D001394 ORTHO05D001237 2.0e-14 82.0 71 52.1
BolC3t17313H Brassica oleracea HOM05D001394 ORTHO05D001237 2.0e-14 82.0 71 52.1
BraA03t13269Z Brassica rapa HOM05D001394 ORTHO05D001237 2.0e-14 82.0 71 52.1
Sabra09G0077800 Salix brachista HOM05D001394 ORTHO05D001237 4.6e-14 80.9 69 60.9
Glyma.07G212500 Glycine max HOM05D001394 ORTHO05D001237 7.8e-14 80.1 69 56.5
TPR.G25419 Trifolium pratense HOM05D001394 ORTHO05D001237 7.8e-14 80.1 70 54.3
CDE03G0237 Ceratophyllum demersum HOM05D001394 ORTHO05D001237 1.0e-13 79.7 69 56.5
Ca_18685_v3 Cicer arietinum L. HOM05D001394 ORTHO05D001237 1.3e-13 79.3 69 55.1
Lalb_Chr05g0219171 Lupinus albus HOM05D001394 ORTHO05D001237 1.3e-13 79.3 70 54.3
Aa31LG8G6050 Aethionema arabicum HOM05D001394 ORTHO05D001237 1.7e-13 79.0 71 50.7
Lalb_Chr09g0328331 Lupinus albus HOM05D001394 ORTHO05D001237 2.3e-13 78.6 70 55.7
VMungo0251G1663 Vigna mungo HOM05D001394 ORTHO05D001237 2.3e-13 78.6 70 52.9
BcaC05g28507 Brassica carinata HOM05D001394 ORTHO05D001237 3.9e-13 77.8 72 50.0
C05p45910 Brassica napus HOM05D001394 ORTHO05D001237 3.9e-13 77.8 72 50.0
BolC5t33310H Brassica oleracea HOM05D001394 ORTHO05D001237 3.9e-13 77.8 72 50.0
Phvul.003G292300 Phaseolus vulgaris HOM05D001394 ORTHO05D001237 3.9e-13 77.8 70 52.9
HPP92_018197 Vanilla planifolia HOM05D001394 ORTHO05D001237 3.9e-13 77.8 69 53.6
BcaB06g25983 Brassica carinata HOM05D001394 ORTHO05D001237 5.0e-13 77.4 71 50.7
A05p30340 Brassica napus HOM05D001394 ORTHO05D001237 6.6e-13 77.0 72 51.4
Psat7g124680 Pisum sativum HOM05D001394 ORTHO05D001237 1.9e-12 75.5 70 54.3
Medtr4g086150 Medicago truncatula HOM05D001394 ORTHO05D001237 2.5e-12 75.1 70 50.0
BcaC09g48881 Brassica carinata HOM05D001394 ORTHO05D001237 5.6e-12 73.9 72 48.6
C01p44850 Brassica napus HOM05D001394 ORTHO05D001237 5.6e-12 73.9 72 48.6
BolC1t04452H Brassica oleracea HOM05D001394 ORTHO05D001237 5.6e-12 73.9 72 48.6
SGA_v2.0_scaffold32G13065 Striga asiatica HOM05D001394 ORTHO05D001237 5.6e-12 73.9 70 52.9
arahy.Tifrunner.gnm1.ann1.80KEYX Arachis hypogaea HOM05D001394 ORTHO05D001237 7.3e-12 73.6 70 51.4
arahy.Tifrunner.gnm1.ann1.M69XSS Arachis hypogaea HOM05D001394 ORTHO05D001237 7.3e-12 73.6 70 51.4
A01p35340 Brassica napus HOM05D001394 ORTHO05D001237 7.3e-12 73.6 72 48.6
BraA01t03615Z Brassica rapa HOM05D001394 ORTHO05D001237 7.3e-12 73.6 72 48.6
unitig_744.g24235 Utricularia gibba HOM05D001394 ORTHO05D001237 9.5e-12 73.2 54 61.1
Actinidia12949 Actinidia chinensis HOM05D001394 ORTHO05D001237 2.1e-11 72.0 40 75.0
BcaB04g20714 Brassica carinata HOM05D001394 ORTHO05D001237 2.3e-10 68.6 72 44.4
AL1G57120 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 6.8e-10 67.0 52 59.6
Zm00001eb011640 Zea mays HOM05D001394 ORTHO05D001237 1.5e-09 65.9 68 50.0
BraA05t21872Z Brassica rapa HOM05D001394 ORTHO05D001237 4.4e-09 64.3 52 53.8
Zm00001eb398050 Zea mays HOM05D001394 ORTHO05D001237 4.4e-09 64.3 53 58.5
Os03g0264000 Oryza sativa ssp. japonica HOM05D001394 ORTHO05D001237 1.7e-08 62.4 66 48.5
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 3.7e-08 61.2 75 44.0
DCAR_029057 Daucus carota HOM05D001394 ORTHO05D001237 3.7e-08 61.2 41 58.5
CARHR105750 Cardamine hirsuta HOM05D001394 ORTHO05D001237 1.1e-07 59.7 50 52.0
Mapoly0119s0040 Marchantia polymorpha HOM05D001394 ORTHO05D001237 2.4e-07 58.5 53 47.2
Pp3c23_10940 Physcomitrium patens HOM05D001394 ORTHO05D001237 2.7e-06 55.1 64 45.3


User provided reference genes

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