Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.6e-85 319.3 156 100.0
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.6e-85 319.3 156 100.0
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 7.1e-73 277.3 156 89.1
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.7e-71 272.7 156 87.2
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 4.3e-70 268.1 156 85.9
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 6.2e-69 264.2 156 82.7
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.8e-68 262.7 156 82.1
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 4.0e-68 261.5 156 82.1
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 4.0e-68 261.5 156 84.6
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.2e-67 260.0 156 83.3
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.6e-67 258.8 156 79.5
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 2.2e-66 255.8 156 78.2
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 2.2e-66 255.8 156 77.6
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 2.2e-66 255.8 156 79.5
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.9e-66 254.6 156 80.8
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 6.4e-66 254.2 156 79.5
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 6.4e-66 254.2 156 78.2
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 6.4e-66 254.2 155 79.4
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.4e-65 253.1 156 78.8
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.4e-65 253.1 156 80.1
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 2.4e-65 252.3 156 80.8
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.4e-65 252.3 156 78.2
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.4e-65 251.1 156 76.3
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.4e-65 251.1 156 76.3
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 7.1e-65 250.8 156 76.3
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 9.3e-65 250.4 156 79.5
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.1e-64 249.2 156 77.6
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 4.6e-64 248.1 156 78.2
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 6.0e-64 247.7 156 75.0
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 7.8e-64 247.3 156 75.6
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.0e-63 245.4 156 76.9
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 8.7e-63 243.8 156 75.6
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 1.1e-62 243.4 156 75.0
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.1e-62 243.4 156 73.7
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.1e-62 243.4 156 78.2
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.5e-62 242.3 156 75.6
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.3e-62 241.9 156 75.6
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 3.3e-62 241.9 156 73.1
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.3e-62 241.5 156 75.0
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.4e-60 236.5 156 72.4
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.4e-60 236.5 156 71.2
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.8e-60 236.1 156 71.2
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 3.1e-60 235.3 156 73.1
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.0e-60 235.0 156 73.1
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 5.3e-60 234.6 156 73.1
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 9.0e-60 233.8 156 71.8
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.2e-59 233.4 156 71.8
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.5e-59 233.0 156 73.1
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.5e-59 233.0 174 64.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.6e-59 232.3 156 69.9
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 7.6e-59 230.7 156 73.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.2e-58 229.2 156 71.2
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.2e-58 229.2 156 71.2
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 2.9e-58 228.8 156 71.8
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 2.9e-58 228.8 156 68.6
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 3.8e-58 228.4 156 67.3
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 6.4e-58 227.6 156 71.8
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.4e-58 227.6 156 71.2
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 8.4e-58 227.3 156 72.4
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 8.4e-58 227.3 156 71.2
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-57 226.9 156 70.5
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.4e-57 225.7 156 69.9
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 2.4e-57 225.7 156 69.9
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.4e-57 225.7 156 70.5
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.4e-57 224.6 156 69.2
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.4e-57 224.6 156 69.2
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 5.4e-57 224.6 156 68.6
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 7.1e-57 224.2 156 68.6
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 7.1e-57 224.2 156 70.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.2e-56 223.4 156 69.2
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.2e-56 223.4 156 71.8
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.6e-56 223.0 156 69.2
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 2.7e-56 222.2 156 69.2
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 3.5e-56 221.9 153 69.9
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 3.5e-56 221.9 156 69.2
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.5e-56 221.9 146 74.0
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 6.0e-56 221.1 154 70.1
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 6.0e-56 221.1 156 69.2
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 6.0e-56 221.1 156 68.6
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 6.0e-56 221.1 156 69.2
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 6.7e-55 217.6 156 69.2
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 5.6e-54 214.5 156 66.7
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 9.6e-54 213.8 151 68.2
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.6e-53 213.0 215 54.9
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.6e-53 213.0 153 69.3
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.6e-53 213.0 156 68.6
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 1.6e-53 213.0 146 68.5
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 4.8e-53 211.5 156 66.0
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 4.8e-53 211.5 133 75.2
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.8e-52 209.5 153 68.6
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 2.4e-52 209.1 155 64.5
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 4.0e-52 208.4 148 68.9
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.3e-52 208.0 151 70.2
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 6.9e-52 207.6 154 65.6
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 2.6e-51 205.7 147 72.1
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 7.6e-51 204.1 148 68.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 9.9e-51 203.8 151 69.5
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 9.9e-51 203.8 128 75.0
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 4.9e-50 201.4 148 66.2
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.9e-50 201.4 157 63.7
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 4.2e-49 198.4 157 63.1
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 7.1e-49 197.6 157 63.1
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.1e-48 196.1 156 62.2
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 2.7e-48 195.7 132 71.2
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 4.6e-48 194.9 156 62.8
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.0e-47 192.2 157 59.9
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 3.9e-47 191.8 157 61.1
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 5.1e-47 191.4 153 64.7
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.5e-46 189.1 163 58.9
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.8e-45 184.9 188 50.5
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.8e-44 183.0 150 62.0
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.0e-42 177.2 152 55.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.3e-42 176.8 155 54.2
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.3e-42 176.8 155 54.8
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.7e-42 176.4 155 54.8
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.7e-42 176.4 155 54.2
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.7e-42 176.4 157 55.4
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.9e-41 172.9 154 53.2
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 2.5e-41 172.6 154 56.5
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 9.3e-41 170.6 129 62.0
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.5e-40 168.7 115 76.5
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 6.3e-37 157.9 147 55.8
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.2e-35 153.7 100 77.0
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 4.5e-35 151.8 110 67.3
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 7.7e-35 151.0 104 69.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.0e-34 150.6 110 66.4
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 3.8e-34 148.7 92 80.4
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 5.0e-34 148.3 145 49.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.6e-32 141.7 105 65.7
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.0e-31 140.6 83 79.5
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.9e-31 138.7 109 64.2
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.4e-28 130.2 147 49.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.0e-26 124.0 149 44.3
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 3.2e-25 119.0 129 49.6
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 3.2e-25 119.0 153 46.4
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 2.2e-18 96.3 68 69.1
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.8e-18 95.5 55 80.0
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.8e-18 95.5 55 80.0
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.4e-17 93.6 154 35.1
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.9e-17 93.2 131 42.7
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.5e-17 91.7 68 63.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.2e-11 73.9 49 73.5
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.0e-10 70.9 130 32.3


User provided reference genes

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