Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.5e-192 675.2 738 100.0
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 7.0e-187 658.3 738 97.6
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.6e-98 363.6 213 89.7
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.0e-97 362.1 398 79.1
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.0e-97 360.5 208 92.3
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.0e-97 360.5 208 92.3
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.3e-96 357.1 212 88.2
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 5.7e-96 356.3 209 89.0
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 5.7e-96 356.3 213 86.9
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 9.7e-96 355.5 214 86.0
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-95 354.4 214 86.0
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.7e-95 353.6 210 87.1
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 3.7e-95 353.6 212 86.3
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.4e-94 350.9 213 86.9
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 6.9e-94 349.4 215 86.0
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 6.9e-94 349.4 260 80.8
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.2e-93 348.6 212 87.7
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.5e-93 348.2 209 86.1
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.0e-93 347.8 216 84.3
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 2.0e-93 347.8 215 84.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.0e-93 347.8 218 83.9
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.6e-93 347.4 221 85.1
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 4.5e-93 346.7 213 84.5
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 5.9e-93 346.3 215 84.7
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 5.9e-93 346.3 212 84.9
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.3e-92 345.1 210 86.7
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.3e-92 345.1 215 83.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 2.2e-92 344.4 212 83.5
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.9e-92 344.0 210 86.7
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.9e-92 344.0 212 84.9
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.9e-92 344.0 258 78.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.8e-92 343.6 208 86.5
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 5.0e-92 343.2 215 83.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.1e-91 342.0 214 83.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.5e-91 340.9 214 85.0
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 2.5e-91 340.9 211 85.3
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 3.2e-91 340.5 215 83.3
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 4.2e-91 340.1 207 86.5
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 4.2e-91 340.1 218 81.7
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 4.2e-91 340.1 215 83.7
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 5.5e-91 339.7 216 81.9
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 5.5e-91 339.7 209 86.1
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 5.5e-91 339.7 213 82.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 7.2e-91 339.3 212 84.4
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 7.2e-91 339.3 205 86.8
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.6e-90 338.2 209 85.6
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.6e-90 338.2 214 82.2
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.6e-90 338.2 215 81.9
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 2.7e-90 337.4 216 81.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.7e-90 337.4 217 82.9
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.7e-90 337.4 214 82.7
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 3.6e-90 337.0 216 81.5
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 3.6e-90 337.0 216 81.5
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.6e-90 337.0 217 82.9
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.6e-90 337.0 212 83.5
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.6e-90 337.0 217 81.6
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.6e-90 337.0 217 82.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 4.7e-90 336.7 218 81.7
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 4.7e-90 336.7 213 83.6
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.0e-89 335.5 218 80.7
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 2.3e-89 334.3 210 83.8
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 5.1e-89 333.2 214 82.2
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.1e-89 333.2 217 82.0
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 6.7e-89 332.8 208 83.2
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 6.7e-89 332.8 214 81.8
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 6.7e-89 332.8 208 84.1
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 6.7e-89 332.8 216 81.9
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.5e-88 331.6 217 83.4
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.0e-88 331.3 262 77.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.0e-88 331.3 216 80.1
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.6e-88 330.9 260 75.4
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 3.3e-88 330.5 214 81.3
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 3.3e-88 330.5 216 80.6
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 4.4e-88 330.1 259 79.5
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 2.2e-87 327.8 209 83.7
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.8e-87 327.4 214 80.8
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.8e-87 327.4 214 80.8
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.8e-86 324.7 216 80.1
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 4.1e-86 323.6 223 78.0
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 2.0e-85 321.2 202 84.2
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.7e-84 318.2 195 85.6
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.9e-84 317.4 218 76.6
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 2.5e-83 314.3 196 85.2
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 2.5e-83 314.3 252 71.0
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.2e-83 313.5 215 75.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 7.2e-83 312.8 216 77.8
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 2.3e-81 307.8 207 77.8
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 3.0e-81 307.4 184 88.0
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 3.9e-81 307.0 207 77.3
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.5e-80 305.1 213 76.1
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.5e-80 305.1 218 73.4
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.6e-80 304.3 198 83.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 3.2e-75 287.3 179 82.7
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 7.2e-75 286.2 186 83.3
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 3.0e-73 280.8 184 79.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 5.2e-73 280.0 214 67.3
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.7e-71 275.0 225 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.8e-70 271.6 203 67.5
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.7e-69 267.7 200 73.0
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.5e-67 261.9 210 66.2
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 2.7e-66 257.7 196 67.3
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 6.1e-66 256.5 190 69.5
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 9.8e-64 249.2 188 73.4
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 5.4e-62 243.4 162 81.5
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.2e-59 233.0 171 75.4
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 4.7e-58 230.3 177 72.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.9e-52 211.1 195 60.5
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 5.8e-40 170.2 150 60.0
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.4e-33 149.1 94 81.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 5.4e-30 137.1 115 59.1
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 6.0e-29 133.7 103 73.8
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 5.6e-27 127.1 77 83.1
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 4.0e-25 120.9 189 39.7
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.0e-24 118.6 75 81.3
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 6.4e-23 113.6 82 74.4
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 7.1e-22 110.2 212 34.0
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.6e-21 109.0 64 84.4
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 6.0e-21 107.1 63 85.7
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 3.9e-20 104.4 63 81.0
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.6e-18 97.8 56 83.9
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 6.9e-17 93.6 180 37.2
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.5e-16 92.4 56 76.8
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 5.8e-16 90.5 97 59.8
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 4.9e-15 87.4 168 36.3
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 1.4e-14 85.9 63 73.0
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.4e-14 85.1 109 45.9
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 5.4e-14 84.0 100 43.0
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 5.4e-14 84.0 100 43.0
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.7e-12 79.0 77 58.4
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.7e-12 79.0 159 36.5
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.8e-09 68.9 63 65.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 9.9e-08 63.2 35 82.9
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.7e-07 62.4 36 80.6
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 6.4e-07 60.5 151 26.5
QL04p035096 Quercus lobata HOM05D005846 ORTHO05D007369 9.3e-06 56.6 29 89.7


User provided reference genes

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