Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 3038.8 1523 100.0
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 2364.0 1540 77.2
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 2350.9 1559 75.8
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2345.1 1481 78.9
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 2187.1 1524 72.8
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 2128.2 1535 70.2
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 2031.1 1539 66.9
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1992.2 1534 67.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1928.7 1532 64.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1915.6 1543 64.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1885.9 1542 62.3
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1879.0 1539 61.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1876.3 1577 63.0
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1864.7 1534 62.5
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1836.6 1543 61.9
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1832.8 1561 61.1
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1825.8 1545 61.2
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1818.1 1540 60.4
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1818.1 1547 61.2
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1815.8 1542 59.3
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1815.0 1532 60.6
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1804.6 1541 61.2
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1801.2 1535 61.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1797.3 1540 60.4
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1796.6 1534 61.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1795.0 1542 58.8
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1795.0 1545 61.0
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1789.6 1639 57.7
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1786.2 1540 60.8
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1778.1 1542 59.9
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1776.1 1533 60.5
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1772.7 1536 60.5
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1772.7 1541 60.6
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1755.3 1536 59.4
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1741.9 1554 58.4
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1739.9 1543 59.8
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1736.5 1530 59.9
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1718.0 1529 58.4
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1709.5 1540 58.6
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1701.8 1539 59.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1697.6 1541 58.3
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1697.6 1539 57.8
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1677.9 1537 57.8
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1673.7 1535 57.5
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1672.9 1535 57.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1671.0 1465 60.4
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1670.6 1523 56.8
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1670.6 1534 57.9
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1669.8 1538 56.2
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1669.4 1536 57.2
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1665.2 1546 54.9
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1665.2 1535 57.5
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1650.6 1535 56.9
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1649.8 1551 56.5
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1649.8 1551 56.5
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1648.6 1545 54.8
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1647.1 1533 58.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1636.7 1557 54.8
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1636.3 1547 53.9
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1607.4 1325 62.6
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1598.2 1227 66.8
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1577.8 1532 54.3
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1564.7 1393 59.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1545.0 1461 55.4
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1542.7 1052 74.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1511.9 1783 46.9
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1497.6 1259 62.4
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1479.9 1585 51.9
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1464.9 1539 49.6
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1458.0 1541 50.5
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1453.7 1539 51.3
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1449.5 1578 51.5
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1443.7 1540 51.2
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1431.8 1541 50.4
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1425.6 1151 63.8
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1421.4 1539 50.0
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1419.8 1127 64.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1407.1 1545 49.1
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1403.3 1539 49.6
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1400.6 1539 49.1
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1399.0 1532 49.7
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1397.9 1543 51.7
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1393.6 1543 48.7
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1393.3 1572 48.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1380.9 1572 48.0
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1366.3 1575 49.4
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1362.4 1547 49.1
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1343.2 1184 57.9
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1285.0 1320 52.8
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1282.3 1542 45.7
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1278.8 1010 64.8
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1227.6 1147 57.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 9.4e-279 964.5 1172 46.5
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.8e-269 931.4 978 51.2
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.7e-268 928.7 1148 45.1
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.4e-258 896.7 601 74.0
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 7.3e-247 858.6 1573 35.3
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 4.4e-244 849.4 1580 35.3
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 2.3e-237 827.0 1571 35.4
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.0e-232 811.6 1025 45.4
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 4.4e-220 769.6 616 64.6
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.2e-217 761.5 598 65.1
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 4.3e-215 753.1 640 61.4
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.6e-204 717.2 1014 42.5
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 2.1e-201 707.6 1015 42.4
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.7e-201 707.2 598 61.7
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 6.7e-200 702.6 1016 42.2
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.8e-192 677.9 619 57.5
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 4.8e-190 669.8 1429 32.5
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.0e-167 594.7 592 54.9
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.1e-165 589.0 1045 39.6
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 3.6e-145 520.8 480 58.8
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 2.3e-144 518.1 584 47.8
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.3e-139 502.3 576 48.6
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 2.5e-130 471.5 519 51.1
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 3.9e-107 394.4 504 43.8
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-102 379.0 1008 27.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 6.2e-97 360.5 304 60.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 4.4e-95 354.4 455 43.7
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 2.2e-94 352.1 824 32.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.7e-92 345.1 318 53.1
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.9e-91 341.3 548 37.4
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 1.2e-87 329.7 429 43.6
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.9e-86 324.3 220 70.9
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-83 316.2 412 48.3
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 3.9e-83 314.7 316 53.8
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.1e-80 305.1 340 45.3
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 3.4e-79 301.6 474 41.1
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 4.5e-79 301.2 470 40.0
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.2e-77 294.7 372 43.0
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.3e-75 289.7 266 54.9
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 6.7e-75 287.3 388 42.8
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 6.3e-73 280.8 252 57.9
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.4e-72 278.9 237 59.5
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.4e-63 248.4 266 52.6
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.0e-58 232.6 294 46.6
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 9.1e-56 223.8 217 53.5
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 5.5e-53 214.5 284 43.3
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.5e-53 214.5 310 41.6
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 8.2e-49 200.7 198 54.5
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 2.4e-48 199.1 195 53.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.6e-44 186.4 187 54.5
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 2.3e-43 182.6 201 48.8
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 4.8e-41 174.9 206 46.6
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.0e-39 169.5 379 33.8
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.2e-37 162.2 158 53.2
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.1e-36 159.5 116 70.7
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 6.8e-35 154.5 149 54.4
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 6.8e-35 154.5 149 52.3
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 2.2e-33 149.4 189 45.5
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.2e-29 135.6 142 49.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 2.7e-28 132.5 115 58.3
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 3.7e-25 122.1 140 47.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-22 113.2 100 61.0
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 8.6e-22 110.9 100 60.0
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-16 92.8 244 28.3
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 3.3e-13 82.4 711 20.5
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.1e-11 75.9 61 57.4
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 5.2e-11 75.1 200 32.5
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 2.2e-09 69.7 67 53.7
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 2.4e-08 66.2 80 48.8
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.6e-07 63.5 39 71.8
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 2.7e-07 62.8 44 68.2


User provided reference genes

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