Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-42 175.3 90 100.0
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.6e-37 157.9 90 90.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.6e-37 157.9 90 90.0
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.2e-36 154.1 90 88.9
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-35 152.9 91 89.0
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-34 146.7 90 86.7
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-33 144.8 90 86.7
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-31 139.4 100 76.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.0e-23 113.2 113 54.9
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.1e-23 110.9 96 66.7
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.9e-22 109.0 114 54.4
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 2.8e-21 105.1 114 53.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.6e-21 104.8 114 51.8
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.4e-20 102.1 105 50.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 3.1e-20 101.7 112 46.4
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.9e-20 100.1 113 47.8
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.5e-19 99.4 113 46.9
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.9e-18 95.1 101 53.5
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.8e-18 94.7 98 53.1
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 6.4e-18 94.0 102 54.9
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 8.4e-18 93.6 98 51.0
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.4e-17 92.8 105 47.6
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.9e-17 92.4 105 48.6
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 1.9e-17 92.4 114 45.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.2e-17 91.7 110 44.5
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.2e-17 91.7 99 49.5
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 4.2e-17 91.3 111 42.3
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 9.2e-17 90.1 113 44.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.2e-16 89.7 105 45.7
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.7e-16 88.6 105 45.7
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 4.6e-16 87.8 100 48.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 4.6e-16 87.8 108 45.4
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.0e-16 87.4 106 45.3
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 3.0e-15 85.1 100 48.0
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.9e-15 84.7 98 48.0
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 6.6e-15 84.0 112 39.3
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 8.7e-15 83.6 103 42.7
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-14 83.2 105 42.9
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.5e-14 82.8 110 42.7
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.5e-14 82.8 101 44.6
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.9e-14 82.4 110 42.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.5e-14 82.0 100 44.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 2.5e-14 82.0 106 45.3
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 3.3e-14 81.6 96 46.9
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 4.3e-14 81.3 105 41.9
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.3e-14 81.3 99 45.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 5.6e-14 80.9 108 41.7
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 7.3e-14 80.5 101 46.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.2e-13 79.7 100 44.0
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.2e-13 79.7 103 43.7
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.2e-13 79.7 100 43.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.6e-13 79.3 100 42.0
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.6e-13 79.3 97 42.3
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.1e-13 79.0 98 44.9
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.8e-13 78.6 97 44.3
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 4.7e-13 77.8 96 43.8
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 6.2e-13 77.4 98 42.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.1e-12 76.6 97 45.4
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.1e-12 76.6 95 46.3
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 3.1e-12 75.1 106 42.5
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-12 74.7 95 44.2
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.3e-12 74.3 109 38.5
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.3e-12 74.3 83 47.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 5.3e-12 74.3 94 43.6
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 5.3e-12 74.3 95 43.2
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 5.3e-12 74.3 100 42.0
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 5.3e-12 74.3 109 41.3
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 6.9e-12 73.9 96 40.6
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 9.0e-12 73.6 99 42.4
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.5e-11 72.8 110 39.1
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.0e-11 72.4 106 39.6
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.6e-11 72.0 106 37.7
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 2.6e-11 72.0 96 40.6
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 3.4e-11 71.6 107 36.4
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 4.4e-11 71.2 107 37.4
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.6e-11 70.5 106 37.7
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 9.9e-11 70.1 111 36.9
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.3e-10 69.7 98 42.9
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.7e-10 69.3 100 42.0
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.7e-10 69.3 92 41.3
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.2e-10 68.9 96 40.6
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.2e-10 68.9 95 43.2
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.9e-10 67.8 95 42.1
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.9e-10 67.8 95 42.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 8.4e-10 67.0 98 36.7
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 8.4e-10 67.0 100 36.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.4e-10 67.0 95 42.1
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 8.4e-10 67.0 85 41.2
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.4e-09 66.2 66 51.5
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.2e-09 65.1 100 37.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.2e-09 65.1 96 40.6
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 4.2e-09 64.7 90 43.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 9.3e-09 63.5 100 35.0
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.2e-08 63.2 97 36.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.2e-08 63.2 96 34.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.2e-08 63.2 95 41.1
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.2e-08 63.2 85 40.0
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.2e-08 63.2 97 35.1
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.6e-08 62.8 103 36.9
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.6e-08 62.8 100 39.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.6e-08 62.8 100 35.0
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.1e-08 62.4 100 35.0
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.1e-08 62.4 102 35.3
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.1e-08 62.4 105 38.1
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.1e-08 62.4 105 36.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 2.7e-08 62.0 102 33.3
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 3.5e-08 61.6 100 34.0
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.0e-08 60.8 107 36.4
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.8e-08 60.5 99 37.4
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.7e-07 59.3 97 34.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-07 59.3 97 34.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.7e-07 59.3 97 34.0
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.7e-07 59.3 92 34.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.9e-07 58.2 59 50.8
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.1e-06 56.6 93 38.7
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.5e-06 56.2 102 37.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.9e-06 55.8 102 33.3
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.3e-06 55.1 104 37.5
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 5.6e-06 54.3 109 31.2
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 9.6e-06 53.5 103 35.9
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 9.6e-06 53.5 85 32.9


User provided reference genes

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