Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 3.8e-134 481.5 240 100.0
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.4e-131 473.0 235 100.0
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.1e-104 383.6 239 79.1
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 3.8e-102 375.2 218 85.8
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 5.5e-101 371.3 228 77.2
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 2.0e-98 362.8 233 74.7
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.5e-93 345.9 233 69.5
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 1.6e-92 343.2 227 73.1
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 6.1e-92 341.3 230 71.3
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 2.3e-91 339.3 231 70.1
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.5e-90 336.7 223 70.0
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 3.7e-89 332.0 223 70.4
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 4.9e-89 331.6 236 67.4
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 8.3e-89 330.9 232 67.7
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 8.3e-89 330.9 232 67.7
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.1e-88 330.5 232 67.2
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 3.2e-88 328.9 231 68.8
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 9.2e-88 327.4 232 66.4
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 1.2e-87 327.0 231 68.4
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 1.2e-87 327.0 231 68.4
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 1.6e-87 326.6 228 68.9
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 2.0e-87 326.2 238 66.0
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 3.5e-87 325.5 232 68.5
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 5.9e-87 324.7 240 65.4
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 7.8e-87 324.3 233 68.7
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.0e-86 321.6 235 67.7
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 6.6e-86 321.2 223 67.7
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 2.5e-85 319.3 230 67.0
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 3.3e-85 318.9 235 67.7
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 9.5e-85 317.4 230 65.7
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.4e-83 313.5 232 65.5
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 1.4e-83 313.5 230 65.7
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 4.0e-83 312.0 230 64.8
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.5e-82 310.1 236 63.6
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 4.4e-82 308.5 231 66.2
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 7.5e-82 307.8 231 64.5
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 9.8e-82 307.4 235 64.7
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.9e-81 305.1 246 63.0
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 6.4e-81 304.7 237 65.0
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 4.6e-79 298.5 230 61.3
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 1.0e-78 297.4 232 64.2
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.3e-78 296.2 235 63.0
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.0e-78 295.8 230 63.5
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.0e-78 295.0 244 61.5
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 8.6e-78 294.3 198 70.7
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 8.6e-78 294.3 224 63.8
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.1e-77 293.9 235 63.0
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.9e-77 293.1 235 62.6
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.9e-77 293.1 221 64.3
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 2.5e-77 292.7 246 59.3
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 4.3e-77 292.0 236 60.6
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 4.3e-77 292.0 221 64.3
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 7.3e-77 291.2 237 62.9
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 4.7e-76 288.5 223 63.2
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 4.7e-76 288.5 232 61.6
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 1.8e-75 286.6 223 63.7
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 8.9e-75 284.3 225 61.3
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 1.5e-74 283.5 229 59.0
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 2.0e-74 283.1 235 58.3
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 2.0e-74 283.1 231 61.9
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 1.3e-73 280.4 197 67.5
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 2.2e-73 279.6 199 68.3
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.4e-72 276.9 229 60.7
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 3.5e-71 272.3 221 61.1
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 4.6e-71 271.9 207 64.7
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 1.3e-70 270.4 221 60.6
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.3e-70 270.4 212 61.8
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.9e-69 266.5 222 58.6
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 7.3e-69 264.6 230 56.5
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 2.8e-68 262.7 225 57.3
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 8.1e-68 261.2 220 57.7
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 1.4e-67 260.4 226 60.2
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 4.0e-67 258.8 234 58.1
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 2.0e-66 256.5 220 58.6
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 3.4e-66 255.8 234 55.6
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 7.6e-66 254.6 214 59.8
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 9.9e-66 254.2 222 56.3
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 3.8e-65 252.3 217 58.5
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 3.8e-65 252.3 204 58.8
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.9e-65 251.9 211 61.1
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 6.4e-65 251.5 217 58.5
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 3.2e-64 249.2 225 56.4
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 4.1e-64 248.8 229 55.5
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 5.4e-64 248.4 218 56.9
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.8e-59 233.4 213 50.7
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 3.1e-59 232.6 201 59.2
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.1e-59 232.6 213 50.2
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 6.9e-59 231.5 201 59.7
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.5e-58 230.3 186 59.1
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 2.0e-58 229.9 229 50.7
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.7e-57 226.9 190 60.0
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 8.4e-57 224.6 232 52.6
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 8.4e-57 224.6 196 58.7
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 5.4e-56 221.9 230 51.3
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 9.3e-56 221.1 222 50.0
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 6.0e-55 218.4 191 57.6
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.3e-54 217.2 167 65.3
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 3.9e-54 215.7 204 55.9
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 5.1e-54 215.3 223 48.4
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 4.3e-53 212.2 170 60.6
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.8e-50 201.8 191 56.5
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 7.6e-50 201.4 137 66.4
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 2.3e-46 189.9 200 51.0
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 1.5e-45 187.2 166 56.0
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.9e-45 186.8 138 65.9
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 6.2e-44 181.8 191 50.8
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 8.1e-44 181.4 164 56.7
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 3.8e-41 172.6 231 41.6
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.4e-40 170.6 217 48.4
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 8.7e-38 161.4 222 44.6
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.9e-37 160.2 241 39.4
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 5.6e-37 158.7 229 41.0
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.5e-34 150.6 110 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.0e-30 137.9 239 32.6
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.0e-30 137.9 103 64.1
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.3e-30 136.7 101 65.3
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 6.7e-30 135.2 115 61.7
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 3.7e-28 129.4 133 50.4
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 8.2e-28 128.3 217 34.1
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 5.9e-26 122.1 67 88.1
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 5.9e-26 122.1 67 88.1
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 7.2e-24 115.2 120 47.5
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.3e-20 104.4 217 30.4
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.8e-19 100.5 94 57.4
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 2.2e-17 93.6 65 64.6
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 2.4e-11 73.6 143 34.3
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 7.7e-10 68.6 158 27.8


User provided reference genes

Program Settings