Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 2157.9 1142 100.0
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1827.0 1163 84.1
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1811.6 1151 83.7
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1779.6 1155 82.3
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1649.4 1172 74.7
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1635.9 1151 76.3
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1601.3 1145 73.6
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1595.9 1155 73.4
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1584.3 1156 75.2
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1578.1 1154 73.8
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1571.2 1156 72.1
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1565.8 1155 73.9
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1560.4 1162 72.5
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1558.9 1156 73.0
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1554.3 1155 73.6
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1553.1 1150 71.7
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1552.7 1150 73.0
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1552.0 1174 70.9
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1550.0 1155 73.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1547.3 1155 74.1
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1546.6 1160 73.5
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1545.8 1174 72.1
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1545.4 1156 71.1
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1544.3 1161 72.5
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1543.1 1157 74.1
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1542.7 1188 72.4
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1539.2 1161 72.4
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1539.2 1148 71.2
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1536.9 1144 71.6
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1525.4 1155 72.0
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1521.9 1144 73.3
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1520.0 1162 69.4
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1518.8 1156 71.5
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1518.4 1161 71.8
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1515.4 1181 68.9
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1515.0 1153 72.9
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1511.1 1180 68.7
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1509.6 1147 70.0
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1509.2 1153 70.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1506.5 1154 72.0
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1503.0 1155 72.2
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1503.0 1155 72.2
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1503.0 1152 71.8
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1502.3 1188 67.6
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1501.9 1153 71.6
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1500.7 1160 69.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1500.7 1156 70.8
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1497.3 1154 69.7
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1497.3 1153 72.5
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1496.1 1157 71.9
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1494.2 1154 72.4
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1493.8 1152 69.6
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1488.4 1180 71.0
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1487.2 1188 67.5
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1486.5 1160 71.4
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1485.7 1154 69.4
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1482.6 1154 71.1
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1475.3 1150 71.3
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1463.7 1113 72.1
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1462.2 1154 68.3
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1452.6 1166 70.3
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1438.7 1153 69.8
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1438.3 1155 70.2
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1155 69.2
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1437.2 1156 69.3
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1434.9 1144 70.3
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1430.6 1161 66.7
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1427.2 1155 69.5
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1418.7 1153 69.0
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1417.5 1159 68.6
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1415.2 1154 68.7
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1411.7 1175 68.0
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1410.2 1175 67.9
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1408.7 1219 65.4
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1407.9 1177 68.1
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1182 67.6
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1403.7 1182 67.9
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1402.5 885 83.4
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1401.7 1178 67.7
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1401.0 1179 67.7
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1399.8 1178 67.5
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1398.3 1156 66.3
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1397.9 1162 68.0
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1382.9 1151 66.4
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1358.6 1156 66.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 1218 63.2
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1329.3 935 77.6
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1315.8 1185 64.6
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1229.9 1038 68.2
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1106.3 919 65.4
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1096.3 1236 51.9
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1089.7 1226 54.2
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1075.5 1213 53.1
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 5.2e-306 1054.7 734 73.6
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.9e-293 1012.3 1169 52.8
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-272 943.7 741 68.6
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 2.1e-251 873.2 1404 41.5
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.2e-249 867.5 589 77.6
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.0e-245 852.8 590 79.2
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.9e-224 783.1 519 78.0
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.2e-223 779.6 519 78.0
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 1.4e-218 764.2 617 68.1
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 8.5e-216 755.0 519 76.9
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.7e-211 740.7 621 65.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.2e-203 713.8 616 64.9
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 4.0e-181 639.8 569 63.3
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 7.5e-180 635.6 546 65.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.2e-172 611.7 1182 36.9
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.4e-170 604.7 572 61.5
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.9e-163 579.7 463 71.5
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.8e-149 534.6 550 57.6
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 4.3e-143 513.5 391 68.8
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 5.4e-130 469.9 311 77.8
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.0e-129 466.5 325 76.0
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.1e-114 419.1 487 52.8
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.8e-110 404.4 539 47.1
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 6.9e-109 399.8 777 34.7
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.7e-107 395.2 377 58.6
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.4e-101 374.8 381 57.5
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.7e-91 342.0 359 53.5
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.6e-89 335.5 1192 27.6
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.7e-86 325.5 444 49.1
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.8e-83 314.3 221 75.6
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 5.5e-82 310.5 193 82.9
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 2.4e-77 295.0 261 55.6
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.5e-75 287.0 254 63.0
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 6.1e-73 280.4 198 74.7
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 8.3e-70 270.0 242 62.8
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-67 262.7 182 72.5
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 8.6e-67 260.0 149 90.6
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 7.2e-66 256.9 147 86.4
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 9.8e-63 246.5 371 44.7
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.7e-62 245.7 371 44.5
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 5.4e-61 240.7 371 44.2
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 5.4e-61 240.7 371 43.7
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.7e-51 209.1 106 99.1
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 4.3e-50 204.5 113 92.0
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 8.1e-49 200.3 111 91.9
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.3e-48 198.7 113 90.3
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 4.4e-47 194.5 113 88.5
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 4.4e-47 194.5 113 88.5
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.9e-45 189.1 270 48.5
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 7.8e-44 183.7 109 88.1
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 3.0e-43 181.8 176 61.4
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 1.9e-42 179.1 106 87.7
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.2e-41 176.4 584 29.3
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 1.2e-39 169.9 97 86.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.0e-39 169.1 99 86.9
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 3.3e-34 151.8 82 92.7
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.1e-32 145.2 120 62.5
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 2.9e-30 138.7 171 50.3
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.6e-28 132.9 149 49.7
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 2.4e-24 119.0 72 81.9
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 2.0e-23 115.9 73 78.1
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 5.8e-23 114.4 75 80.0
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.7e-22 112.8 75 78.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 2.4e-21 109.0 73 74.0
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 3.5e-20 105.1 91 64.8
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 4.0e-08 65.1 51 68.6


User provided reference genes

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