Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 2704.5 1388 100.0
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 2694.1 1386 99.8
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2228.4 1392 82.4
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2078.1 1392 78.2
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2050.8 1394 77.3
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2023.8 1450 75.0
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 1913.7 1391 70.9
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 1879.4 1391 70.5
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1859.0 1392 68.9
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 1801.2 1391 67.5
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 1795.8 1391 68.4
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 1793.9 1391 68.6
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1775.8 1389 66.9
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1774.6 1388 66.8
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 1770.7 1391 67.4
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 1768.8 1392 67.5
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 1766.9 1395 66.7
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 1759.6 1396 67.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 1758.4 1393 67.8
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 1755.3 1392 65.9
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 1749.6 1392 66.3
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 1743.8 1391 65.2
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1743.4 1422 65.5
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 1733.0 1392 65.4
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1729.9 1391 65.3
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1724.1 1452 63.9
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1723.4 1457 63.7
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1720.7 1391 65.3
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1718.0 1467 63.2
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1717.6 1395 64.4
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1717.6 1391 64.3
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1714.1 1392 64.9
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1702.6 1391 64.1
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 1699.9 1388 64.5
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1699.1 1386 64.5
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1694.5 1390 63.5
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1686.4 1388 63.6
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1685.2 1395 64.1
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1685.2 1393 63.3
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1683.7 1392 63.4
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1681.4 1395 63.2
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1680.6 1400 63.8
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1677.5 1393 63.0
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1672.9 1394 64.4
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1670.6 1412 62.6
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1669.4 1395 62.7
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1667.9 1425 64.2
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1656.7 1391 62.1
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1654.0 1420 61.8
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1630.9 1323 65.3
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1630.2 1390 62.3
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1625.1 1390 62.7
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1625.1 1396 61.6
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1624.0 1396 62.8
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1620.9 1395 62.4
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1616.7 1390 62.0
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1605.5 1392 62.2
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1598.9 1392 61.1
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1597.8 1391 61.8
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1593.9 1386 60.8
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1588.9 1391 61.4
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1584.3 1393 61.2
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1581.6 1389 60.4
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1578.1 1389 60.3
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1573.5 1393 59.9
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1571.6 1396 60.1
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1560.8 1421 59.3
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1555.4 1396 59.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1539.2 1386 59.3
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1507.3 1252 64.4
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1480.3 1365 58.4
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1474.1 1393 57.9
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1469.9 1198 63.4
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1461.4 1198 63.0
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1459.1 1393 56.1
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1452.6 1393 57.2
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1450.6 1400 57.0
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1443.3 1399 56.7
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1442.6 1394 57.0
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1442.6 1335 57.9
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1439.9 1394 56.8
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1434.9 1398 56.6
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1434.5 1405 56.3
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1431.8 1405 56.4
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1431.4 1394 56.3
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1429.1 1400 56.5
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1415.6 1336 57.6
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1415.2 1391 55.3
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1409.0 1395 55.9
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1406.7 1396 55.7
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1319.7 1387 51.9
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1258.4 1392 50.4
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 0.0e+00 1254.6 1315 57.7
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1157.9 815 74.6
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 5.9e-288 995.0 1412 43.3
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 9.5e-254 881.3 1119 46.6
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 5.1e-239 832.4 694 63.0
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.3e-210 738.0 645 60.8
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 3.1e-188 663.7 1423 33.0
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 3.1e-180 637.1 555 62.5
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.6e-174 617.5 486 65.4
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.2e-158 565.5 542 57.4
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 3.3e-153 547.4 429 62.7
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.2e-152 545.4 650 53.5
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 9.8e-142 509.2 430 58.8
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 1.4e-132 478.8 1376 29.4
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.4e-132 476.9 516 52.5
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.3e-130 472.2 426 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 1.1e-113 416.0 1126 29.6
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 3.6e-112 411.0 343 65.3
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 5.3e-103 380.6 900 34.6
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 3.8e-101 374.4 278 67.3
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 2.3e-90 338.6 305 62.0
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.1e-87 329.7 488 40.8
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 2.5e-84 318.5 215 75.3
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.4e-78 298.1 384 45.3
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 7.7e-78 297.0 1351 24.8
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.3e-74 285.4 163 89.0
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-68 266.2 328 48.5
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 7.5e-65 253.8 323 47.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.4e-63 249.6 542 37.1
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.0e-61 241.1 153 78.4
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.0e-43 180.6 112 83.0
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.0e-42 180.3 137 61.3
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-40 172.2 328 37.8
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 8.3e-40 170.6 208 46.2
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.1e-39 170.2 229 41.5
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 4.4e-33 148.3 113 67.3
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-26 127.1 228 38.2
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 2.4e-23 115.9 68 76.5
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 1.1e-20 107.1 109 47.7
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.3e-12 77.8 102 44.1
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 9.6e-12 77.4 133 32.3
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 1.2e-11 77.0 195 33.8
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.8e-08 65.5 76 48.7
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 8.4e-08 64.3 45 75.6
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 1.6e-06 60.1 117 38.5


User provided reference genes

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