Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006386 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 2.0e-132 476.1 305 100.0
CSS0048401 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 3.2e-130 468.8 305 82.6
CSS0033325 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 1.3e-118 430.3 305 81.6
CSS0008974 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D011600 2.9e-115 419.1 305 92.5
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 1.7e-83 313.5 256 66.4
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 2.7e-76 289.7 267 70.0
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.6e-76 288.9 267 69.7
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.3e-75 286.6 257 66.5
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 3.0e-75 286.2 255 62.7
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 6.6e-75 285.0 266 60.9
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 8.7e-75 284.6 257 75.5
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.1e-74 284.3 257 76.3
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 1.6e-73 280.4 257 74.3
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 3.6e-73 279.3 262 69.8
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 6.2e-73 278.5 257 73.5
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 1.4e-72 277.3 257 66.1
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 3.1e-72 276.2 257 74.3
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 6.9e-72 275.0 257 77.0
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 2.0e-71 273.5 269 67.3
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.0e-71 273.5 143 95.1
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 2.0e-71 273.5 262 75.6
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 2.6e-71 273.1 262 75.6
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 1.3e-70 270.8 269 63.6
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 3.8e-70 269.2 271 60.5
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 1.4e-69 267.3 269 74.7
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.4e-69 267.3 269 71.4
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 4.2e-69 265.8 248 72.2
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 5.4e-69 265.4 253 57.7
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 3.5e-68 262.7 269 64.3
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 4.6e-68 262.3 259 65.3
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 6.0e-68 261.9 270 68.5
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.3e-67 260.8 262 66.4
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 6.7e-67 258.5 255 76.5
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 8.7e-67 258.1 269 73.2
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 1.1e-66 257.7 206 65.0
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 1.9e-66 256.9 257 64.6
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 3.3e-66 256.1 257 76.7
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 5.6e-66 255.4 246 64.6
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 2.1e-65 253.4 257 69.6
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 3.7e-65 252.7 257 74.3
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 3.7e-65 252.7 256 69.9
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 8.1e-65 251.5 269 62.1
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 9.0e-64 248.1 257 66.1
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.2e-63 247.7 250 68.8
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.2e-63 247.7 250 68.8
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 2.0e-63 246.9 257 73.2
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.0e-63 246.9 206 63.6
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 2.6e-63 246.5 251 60.6
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-62 244.2 257 65.0
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.7e-62 243.8 257 65.0
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 2.9e-62 243.0 250 68.4
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 2.9e-62 243.0 206 61.2
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.9e-62 243.0 143 86.7
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 2.9e-62 243.0 269 55.0
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 2.9e-62 243.0 257 68.9
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 2.9e-62 243.0 257 64.6
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 3.8e-62 242.7 269 65.1
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 3.8e-62 242.7 250 54.4
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 4.9e-62 242.3 206 60.7
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 6.4e-62 241.9 206 60.7
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 6.4e-62 241.9 273 53.8
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.1e-61 241.1 143 86.0
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 1.1e-61 241.1 143 85.3
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.4e-61 240.7 206 60.7
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 1.9e-61 240.4 255 54.9
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 3.2e-61 239.6 206 60.2
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.2e-61 239.6 257 64.2
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 3.2e-61 239.6 257 65.0
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 4.2e-61 239.2 257 56.4
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 4.2e-61 239.2 262 59.5
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 5.5e-61 238.8 202 76.2
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 5.5e-61 238.8 248 66.9
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 7.1e-61 238.4 206 60.2
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 7.1e-61 238.4 206 60.2
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 7.1e-61 238.4 261 64.4
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 7.1e-61 238.4 143 82.5
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 9.3e-61 238.0 206 60.2
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 1.6e-60 237.3 257 61.5
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 1.6e-60 237.3 257 54.1
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 2.1e-60 236.9 257 68.5
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 3.5e-60 236.1 205 77.1
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 6.0e-60 235.3 255 65.5
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 1.0e-59 234.6 206 74.3
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 1.0e-59 234.6 256 72.3
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 1.3e-59 234.2 205 76.6
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 1.3e-59 234.2 140 84.3
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.8e-59 233.8 259 63.3
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 2.3e-59 233.4 190 74.2
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 2.3e-59 233.4 206 75.7
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 2.3e-59 233.4 253 69.2
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 3.0e-59 233.0 205 70.2
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 3.9e-59 232.6 190 62.6
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 5.1e-59 232.3 257 68.9
FAN06G4966 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.7e-59 231.9 262 62.6
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 6.7e-59 231.9 143 79.0
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 6.7e-59 231.9 143 80.4
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 8.7e-59 231.5 143 81.8
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 1.1e-58 231.1 143 81.1
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 1.1e-58 231.1 143 81.8
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 1.9e-58 230.3 187 72.7
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 1.9e-58 230.3 143 78.3
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 2.5e-58 229.9 143 80.4
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.5e-58 229.9 143 79.7
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 2.5e-58 229.9 143 79.7
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 3.3e-58 229.6 187 69.0
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 5.6e-58 228.8 143 79.0
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 7.4e-58 228.4 143 79.7
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 9.6e-58 228.0 257 59.5
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 9.6e-58 228.0 267 62.9
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 9.6e-58 228.0 143 79.7
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 1.3e-57 227.6 269 62.1
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 1.3e-57 227.6 143 80.4
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 2.1e-57 226.9 188 69.7
FAN06G4355 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-57 226.9 246 64.6
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.4e-56 224.2 258 61.6
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 1.8e-56 223.8 143 77.6
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 1.8e-56 223.8 239 65.7
SEGI_01462 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 2.4e-56 223.4 202 57.4
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 2.4e-56 223.4 143 76.9
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 6.9e-56 221.9 257 66.5
FvH4_7g27643 Fragaria vesca HOM05D002696 ORTHO05D003940 1.2e-55 221.1 246 63.4
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.2e-55 221.1 261 61.7
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 1.2e-55 221.1 257 66.1
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 2.6e-55 219.9 143 76.9
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 3.4e-55 219.5 140 80.0
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 3.4e-55 219.5 143 76.9
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 3.4e-55 219.5 137 78.1
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 3.4e-55 219.5 202 56.9
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 4.5e-55 219.2 267 61.4
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 2.2e-54 216.9 202 66.8
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 2.9e-54 216.5 137 81.0
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 8.4e-54 214.9 135 80.7
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 2.5e-53 213.4 142 76.1
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 3.0e-51 206.5 251 47.8
Aqoxy7G02845 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 5.5e-45 185.7 143 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 6.1e-44 182.2 206 57.8
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.1e-42 177.9 251 40.6
MBI14_g23360_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 6.9e-40 168.7 112 74.1
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 6.9e-40 168.7 139 61.2
CBR_g40808 Chara braunii HOM05D002696 ORTHO05D003940 1.5e-39 167.5 139 59.7
MBI05_g15481_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.4e-37 161.0 111 73.0
MBI12_g17812_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.6e-36 157.5 108 73.1
MBI14_g00416_MAGBIO Magnolia biondii HOM05D002410 ORTHO05D011600 2.3e-35 153.7 112 69.6
MCO13G593 Micromonas commoda HOM05D002696 ORTHO05D003940 2.3e-35 153.7 139 56.8
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 5.3e-32 142.5 140 50.7
MBI10_g30245_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 3.8e-30 136.3 85 82.4
MBI11_g16498_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 7.2e-29 132.1 93 66.7
FAN10G0513 Fragaria x ananassa HOM05D002696 ORTHO05D011600 2.1e-28 130.6 83 74.7
arahy.Tifrunner.gnm1.ann1.REY0GV Arachis hypogaea HOM05D002696 ORTHO05D011600 3.9e-27 126.3 103 68.0
MBI18_g00540_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.5e-26 124.4 89 69.7
MBI05_g00255_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 9.7e-26 121.7 93 62.4
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.7e-25 120.9 84 75.0
arahy.Tifrunner.gnm1.ann1.MK0HFG Arachis hypogaea HOM05D002696 ORTHO05D011600 4.8e-25 119.4 82 75.6
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.1e-24 116.7 226 40.7
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.3e-24 115.9 87 71.3
MBI14_g24976_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.7e-22 110.9 127 70.9
Cre02.g086650 Chlamydomonas reinhardtii HOM05D002696 ORTHO05D003940 6.5e-22 109.0 139 41.7
MBI14_g07051_MAGBIO Magnolia biondii HOM05D002410 ORTHO05D002805 9.4e-21 105.1 112 51.8
FAN10G0536 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.1e-20 104.0 67 77.6
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 6.1e-20 102.4 89 62.9
FAN01G1139 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.0e-19 101.7 67 76.1
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 1.4e-19 101.3 249 43.0
MBI08_g12708_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D000022 1.4e-19 101.3 62 83.9
Cfa024848 Carpinus fangiana HOM05D002696 ORTHO05D003940 5.2e-19 99.4 146 39.0
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 1.2e-18 98.2 139 42.4
Actinidia22999 Actinidia chinensis HOM05D002696 ORTHO05D011600 2.0e-18 97.4 142 43.7
MBI02_g02068_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 5.7e-18 95.9 60 81.7
MBI18_g32983_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 3.7e-17 93.2 57 84.2
FAN06G3863 Fragaria x ananassa HOM05D002696 ORTHO05D011600 4.1e-16 89.7 53 86.8
MBI09_g21103_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 5.3e-16 89.4 59 83.1
FvH4_7g27331 Fragaria vesca HOM05D002696 ORTHO05D003940 4.5e-15 86.3 53 81.1
MBI01_g24085_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.3e-14 84.7 60 63.3
MBI18_g43604_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.7e-14 84.3 58 75.9
MBI18_g38010_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 2.2e-14 84.0 89 56.2
MBI13_g39738_MAGBIO Magnolia biondii HOM05D002410 ORTHO05D011600 1.5e-13 81.3 175 37.7
SalBow8G2689 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.6e-12 77.8 53 77.4
GSVIVG01018699001 Vitis vinifera HOM05D002696 ORTHO05D003940 1.4e-11 74.7 54 72.2
arahy.Tifrunner.gnm1.ann1.D9AMXU Arachis hypogaea HOM05D004200 ORTHO05D004996 1.8e-11 74.3 75 58.7
Actinidia23000 Actinidia chinensis HOM05D002696 ORTHO05D003940 1.3e-09 68.2 64 59.4
SalBow8G2062 Salvia bowleyana HOM05D002696 ORTHO05D011600 1.8e-08 64.3 52 55.8
HPP92_013638 Vanilla planifolia HOM05D002696 ORTHO05D011600 8.6e-06 55.5 44 56.8


User provided reference genes

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