Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 0.0e+00 1728.4 889 100.0
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 0.0e+00 1223.8 967 69.4
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 0.0e+00 1078.2 939 63.9
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 1.9e-303 1045.8 908 64.6
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 4.6e-294 1014.6 942 62.2
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 2.5e-292 1008.8 949 60.5
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 6.2e-291 1004.2 946 59.1
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 8.2e-291 1003.8 1006 58.9
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 2.3e-285 985.7 945 58.1
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 8.7e-285 983.8 945 57.9
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.6e-281 972.2 946 57.8
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.4e-281 971.8 945 57.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 5.9e-281 971.1 949 57.2
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 7.2e-279 964.1 958 58.2
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 3.3e-276 955.3 963 57.5
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 3.7e-275 951.8 972 56.6
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 9.1e-274 947.2 972 56.7
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 5.9e-273 944.5 1002 53.4
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.7e-270 934.9 952 56.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 4.7e-270 934.9 981 56.6
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 6.1e-270 934.5 962 56.8
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 6.7e-269 931.0 945 56.8
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 4.4e-268 928.3 974 55.1
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-266 923.7 947 55.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.1e-266 922.2 953 56.6
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.1e-263 913.7 970 55.4
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 5.2e-261 904.8 970 54.2
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 6.3e-259 897.9 966 55.2
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 4.7e-254 881.7 948 54.2
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 8.8e-253 877.5 840 58.2
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.5e-252 876.7 936 55.7
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.4e-252 875.2 1012 52.2
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 4.8e-251 871.7 927 55.1
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 4.8e-251 871.7 1043 51.7
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 8.3e-251 870.9 1013 52.1
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.2e-249 867.1 1011 52.0
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 2.2e-248 862.8 927 55.0
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.5e-247 860.1 926 54.2
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.5e-247 859.4 1013 51.8
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 2.5e-247 859.4 952 52.3
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 2.5e-247 859.4 867 57.9
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 2.5e-247 859.4 927 55.0
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 8.8e-245 850.9 1037 50.9
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.5e-244 850.1 956 53.1
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 4.4e-244 848.6 928 54.3
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 3.1e-242 842.4 959 52.8
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 5.9e-241 838.2 890 54.9
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 2.5e-239 832.8 972 52.1
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.3e-239 832.4 789 60.3
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.2e-236 823.9 946 52.2
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 2.6e-236 822.8 966 50.0
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 3.2e-234 815.8 953 51.7
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 5.4e-234 815.1 933 51.2
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 2.3e-232 809.7 972 50.9
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.5e-231 807.0 848 56.6
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 3.6e-230 802.4 767 57.4
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.3e-229 799.7 968 51.2
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.3e-227 793.9 967 49.3
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.1e-226 790.8 947 50.6
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.4e-226 789.6 976 49.0
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 7.8e-225 784.6 960 49.1
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.0e-224 784.3 935 49.8
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.3e-224 783.1 950 50.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 8.6e-224 781.2 989 48.0
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 4.7e-222 775.4 925 50.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 8.0e-222 774.6 847 54.8
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 4.4e-220 768.8 977 48.9
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 5.1e-216 755.4 926 49.4
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 6.6e-216 755.0 1088 45.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 8.6e-216 754.6 981 47.2
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 4.7e-214 748.8 946 48.9
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.1e-213 746.1 966 47.8
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 4.9e-211 738.8 936 48.8
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 1.3e-208 730.7 970 47.1
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 3.3e-207 726.1 960 46.9
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 2.6e-204 716.5 922 48.5
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 4.4e-204 715.7 984 45.7
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 5.8e-204 715.3 917 48.5
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 9.6e-199 698.0 944 45.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.1e-198 696.8 989 45.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.4e-197 694.1 985 45.4
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-196 690.6 894 47.0
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 3.4e-196 689.5 758 54.4
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.7e-195 687.2 1041 43.3
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.4e-194 684.1 924 46.5
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.3e-192 677.6 804 51.2
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.4e-189 667.5 936 44.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 2.9e-187 659.8 941 44.0
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 6.9e-181 638.6 1012 41.7
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.9e-178 630.6 961 43.5
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.3e-176 624.4 1006 41.0
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.9e-175 620.5 798 50.6
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 3.4e-164 583.2 954 41.4
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 7.7e-164 582.0 995 40.1
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.5e-162 577.0 945 41.2
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.0e-160 570.1 945 42.2
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 1.3e-158 564.7 938 39.6
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 2.4e-157 560.5 931 39.8
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 4.5e-156 556.2 926 40.2
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.9e-154 550.8 937 39.6
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 2.5e-154 550.4 909 41.7
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 3.2e-154 550.1 938 39.7
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 7.2e-154 548.9 925 40.1
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.0e-152 545.0 943 38.9
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.4e-152 544.7 938 39.1
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.5e-151 541.2 944 39.0
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 3.7e-150 536.6 565 56.1
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 7.0e-149 532.3 588 52.9
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-148 531.2 677 48.3
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 8.5e-147 525.4 926 39.4
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.8e-139 500.0 566 52.8
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.5e-138 498.0 575 51.7
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 4.2e-138 496.5 543 53.8
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.5e-130 470.7 611 48.4
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 2.7e-124 450.7 1020 34.8
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.6e-113 414.8 764 37.6
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 8.0e-113 412.5 759 38.2
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.8e-112 411.4 761 37.7
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.1e-112 410.6 1005 32.4
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.4e-109 401.0 385 59.7
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.7e-108 397.5 263 79.1
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 4.6e-108 396.7 1006 31.1
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.3e-107 395.2 601 43.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.1e-105 387.9 764 36.6
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.6e-103 380.9 789 35.5
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 8.3e-102 375.9 1007 32.1
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 3.2e-101 374.0 443 50.1
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.7e-99 368.2 540 42.2
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 8.1e-97 359.4 786 34.9
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.8e-96 358.2 564 40.6
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-91 342.4 1067 27.7
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 5.1e-91 340.1 351 56.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 3.3e-90 337.4 701 35.9
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.2e-89 335.5 349 56.4
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.8e-84 316.2 286 60.5
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 8.7e-83 312.8 483 43.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 3.6e-81 307.4 550 38.0
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.1e-76 291.6 680 33.2
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 2.3e-75 288.1 338 50.0
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 9.6e-74 282.7 373 47.5
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 9.6e-74 282.7 373 47.2
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 9.6e-74 282.7 298 60.1
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 3.4e-63 247.7 261 54.4
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.5e-63 247.3 350 44.6
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.2e-53 214.5 377 39.8
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.6e-52 211.1 241 51.0
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 3.1e-48 198.0 349 41.0
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-45 189.5 163 60.1
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.6e-44 185.7 174 64.9
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.0e-43 183.0 306 40.8
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.7e-42 176.4 152 60.5
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.0e-35 154.8 233 44.6
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 4.8e-33 147.5 195 49.2
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.0e-31 142.1 229 43.7
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 5.9e-31 140.6 175 49.7
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.0e-30 139.8 181 46.4
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.2e-30 138.7 162 45.7
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 3.2e-29 134.8 123 61.8
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.0e-28 130.2 140 55.0
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.4e-27 129.4 190 43.7
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 8.8e-27 126.7 99 67.7
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 3.3e-26 124.8 193 39.9
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 1.1e-24 119.8 173 46.2
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.4e-24 119.4 186 41.9
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.6e-20 104.8 191 38.7
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 4.7e-20 104.4 92 62.0
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 8.8e-19 100.1 83 63.9
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 2.2e-17 95.5 183 36.6
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.4e-16 92.0 96 50.0
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 5.4e-16 90.9 155 36.1
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 7.0e-16 90.5 95 49.5
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 2.9e-14 85.1 95 43.2
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 2.5e-13 82.0 103 49.5
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 2.1e-12 79.0 75 45.3
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.6e-12 78.2 68 63.2
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-11 75.1 131 35.9
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 8.8e-11 73.6 103 46.6
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-10 73.2 226 31.0
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 2.2e-09 68.9 80 51.2
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 3.7e-09 68.2 67 53.7
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 8.3e-09 67.0 170 30.0
MELO3C027569.2 Cucumis melo HOM05D011664 ORTHO05D015088 9.2e-08 63.5 55 61.8
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 4.5e-07 61.2 94 40.4
MELO3C027354.2 Cucumis melo HOM05D011664 ORTHO05D015088 2.9e-06 58.5 74 47.3
Rhsim01G0181800 Rhododendron simsii HOM05D036485 ORTHO05D013105 2.9e-06 58.5 80 48.8


User provided reference genes

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