Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005726 Camellia sinensis var. sinensis HOM05D001613 ORTHO05D043324 3.7e-51 204.5 100 100.0
Actinidia09005 Actinidia chinensis HOM05D001613 ORTHO05D001556 8.7e-24 113.6 111 60.4
Actinidia39137 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.1e-23 113.2 111 58.6
Rhsim12G0202800 Rhododendron simsii HOM05D001613 ORTHO05D001556 1.9e-23 112.5 93 63.4
Dinv30443 Davidia involucrata HOM05D001613 ORTHO05D001556 3.6e-22 108.2 104 59.6
vmacro17016 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 9.9e-20 100.1 110 53.6
vmacro17020 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 9.9e-20 100.1 110 53.6
Dinv37983 Davidia involucrata HOM05D001613 ORTHO05D001556 2.3e-16 89.0 88 54.5
TAR626G0213 Trochodendron aralioides HOM05D001613 ORTHO05D001556 5.1e-16 87.8 84 54.8
Actinidia21707 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.1e-15 86.7 81 55.6
QL05p020351 Quercus lobata HOM05D001613 ORTHO05D001556 7.4e-15 84.0 104 46.2
Actinidia32698 Actinidia chinensis HOM05D001613 ORTHO05D001556 1.3e-14 83.2 81 55.6
Nitab4.5_0001755g0130 Nicotiana tabacum HOM05D001613 ORTHO05D001556 2.8e-14 82.0 104 41.3
Oeu026793.1 Olea europaea HOM05D001613 ORTHO05D001556 1.1e-13 80.1 79 51.9
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 1.4e-13 79.7 117 41.0
QL02p071875 Quercus lobata HOM05D001613 ORTHO05D001556 1.4e-13 79.7 98 48.0
Haze_15839 Corylus avellana HOM05D001613 ORTHO05D001556 2.4e-13 79.0 119 42.0
Hma1.2p1_1056F.1_g252630 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 2.4e-13 79.0 90 47.8
Lj5A54T62 Lonicera japonica HOM05D001613 ORTHO05D001556 2.4e-13 79.0 117 42.7
Migut.I00902 Erythranthe guttata HOM05D001613 ORTHO05D001556 3.1e-13 78.6 83 50.6
MSTRG.22643 Avicennia marina HOM05D001613 ORTHO05D001556 1.5e-12 76.3 83 49.4
MD09G1204600 Malus domestica HOM05D001613 ORTHO05D001556 5.8e-12 74.3 85 47.1
GSVIVG01017001001 Vitis vinifera HOM05D001613 ORTHO05D001556 5.8e-12 74.3 81 43.2
Nitab4.5_0009505g0010 Nicotiana tabacum HOM05D001613 ORTHO05D001556 7.6e-12 73.9 101 41.6
PGR102G0547 Punica granatum HOM05D001613 ORTHO05D001556 1.0e-11 73.6 85 44.7
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 1.3e-11 73.2 82 43.9
Cc04_g02640 Coffea canephora HOM05D001613 ORTHO05D001556 1.7e-11 72.8 69 56.5
Prupe.3G060300 Prunus persica HOM05D001613 ORTHO05D001556 2.9e-11 72.0 88 45.5
CSS0023026 Camellia sinensis var. sinensis HOM05D001613 ORTHO05D001556 4.9e-11 71.2 85 44.7
CiPaw.01G232100 Carya illinoinensis HOM05D001613 ORTHO05D001556 4.9e-11 71.2 112 42.0
Duzib192G0362 Durio zibethinus HOM05D001613 ORTHO05D001556 4.9e-11 71.2 80 45.0
Eucgr.F03070 Eucalyptus grandis HOM05D001613 ORTHO05D001556 4.9e-11 71.2 86 43.0
SalBow2G1143 Salvia bowleyana HOM05D001613 ORTHO05D001556 4.9e-11 71.2 82 50.0
TAR624G0413 Trochodendron aralioides HOM05D001613 ORTHO05D001556 4.9e-11 71.2 85 44.7
Nn8g39093 Nelumbo nucifera HOM05D001613 ORTHO05D001556 3.2e-10 68.6 92 42.4
Sp1g13530 Schrenkiella parvula HOM05D001613 ORTHO05D001556 7.1e-10 67.4 73 46.6
BraA06t24301Z Brassica rapa HOM05D001613 ORTHO05D001556 9.3e-10 67.0 96 41.7
Ciclev10026320m.g Citrus clementina HOM05D001613 ORTHO05D001556 9.3e-10 67.0 103 41.7
Hund06660 Selenicereus undatus HOM05D001613 ORTHO05D001556 9.3e-10 67.0 52 57.7
AL1G27300 Arabidopsis lyrata HOM05D001613 ORTHO05D001556 1.6e-09 66.2 83 39.8
Carub.0001s1497 Capsella rubella HOM05D001613 ORTHO05D001556 1.6e-09 66.2 76 43.4
Gohir.A10G066200 Gossypium hirsutum HOM05D001613 ORTHO05D001556 1.6e-09 66.2 92 41.3
Gohir.D10G067500 Gossypium hirsutum HOM05D001613 ORTHO05D001556 1.6e-09 66.2 92 41.3
Gorai.011G072000 Gossypium raimondii HOM05D001613 ORTHO05D001556 1.6e-09 66.2 92 41.3
BcaC05g25450 Brassica carinata HOM05D001613 ORTHO05D001556 2.7e-09 65.5 63 46.0
A06p11210 Brassica napus HOM05D001613 ORTHO05D001556 2.7e-09 65.5 94 40.4
C05p13340 Brassica napus HOM05D001613 ORTHO05D001556 2.7e-09 65.5 63 46.0
BolC5t30071H Brassica oleracea HOM05D001613 ORTHO05D001556 2.7e-09 65.5 63 46.0
THA.LOC104812527 Tarenaya hassleriana HOM05D001613 ORTHO05D001556 2.7e-09 65.5 74 44.6
CAN.G1143.3 Capsicum annuum HOM05D001613 ORTHO05D001556 4.6e-09 64.7 68 44.1
PGSC0003DMG400002529 Solanum tuberosum HOM05D001613 ORTHO05D001556 4.6e-09 64.7 99 40.4
Atru.chr1.3516 Acer truncatum HOM05D001613 ORTHO05D001556 6.0e-09 64.3 105 37.1
AT1G15215 Arabidopsis thaliana HOM05D001613 ORTHO05D001556 6.0e-09 64.3 85 40.0
Hma1.2p1_0154F.1_g068100 Hydrangea macrophylla HOM05D001613 ORTHO05D001556 7.9e-09 63.9 65 43.1
Sopen03g039770 Solanum pennellii HOM05D001613 ORTHO05D001556 7.9e-09 63.9 99 40.4
CANSAT01G1609 Cannabis sativa HOM05D001613 ORTHO05D001556 1.0e-08 63.5 89 41.6
Lalb_Chr25g0280141 Lupinus albus HOM05D001613 ORTHO05D001556 1.0e-08 63.5 72 38.9
CANSAT01G1940 Cannabis sativa HOM05D001613 ORTHO05D001556 2.3e-08 62.4 89 40.4
Manes.04G133600 Manihot esculenta HOM05D001613 ORTHO05D001556 2.3e-08 62.4 62 48.4
TPR.G32251 Trifolium pratense HOM05D001613 ORTHO05D001556 2.3e-08 62.4 93 36.6
Ca_23253_v3 Cicer arietinum L. HOM05D001613 ORTHO05D001556 3.0e-08 62.0 74 41.9
TPR.G2460 Trifolium pratense HOM05D001613 ORTHO05D001556 3.9e-08 61.6 93 35.5
Dinv23386 Davidia involucrata HOM05D001613 ORTHO05D001556 5.1e-08 61.2 87 36.8
Aqoxy7G03880 Aquilegia oxysepala HOM05D001613 ORTHO05D001556 6.7e-08 60.8 84 40.5
Sc12g0009740 Simmondsia chinensis HOM05D001613 ORTHO05D001556 6.7e-08 60.8 67 46.3
Atru.chr7.2061 Acer truncatum HOM05D001613 ORTHO05D001556 8.7e-08 60.5 57 50.9
Lsat_1_v5_gn_1_37000 Lactuca sativa HOM05D001613 ORTHO05D001556 8.7e-08 60.5 73 43.8
TWI75G1867 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 1.1e-07 60.1 102 39.2
MBI01_g35401_MAGBIO Magnolia biondii HOM05D001613 ORTHO05D001556 1.5e-07 59.7 64 48.4
TWI18G1193 Tripterygium wilfordii HOM05D001613 ORTHO05D001556 1.5e-07 59.7 103 38.8
GSVIVG01035290001 Vitis vinifera HOM05D001613 ORTHO05D001556 1.5e-07 59.7 96 39.6
arahy.Tifrunner.gnm1.ann1.440ZV2 Arachis hypogaea HOM05D001613 ORTHO05D001556 3.3e-07 58.5 74 37.8
arahy.Tifrunner.gnm1.ann1.ARI2AB Arachis hypogaea HOM05D001613 ORTHO05D001556 3.3e-07 58.5 74 37.8
PGR044G2336 Punica granatum HOM05D001613 ORTHO05D001556 4.3e-07 58.2 57 40.4
Medtr8g014075 Medicago truncatula HOM05D001613 ORTHO05D001556 5.7e-07 57.8 72 36.1
Cpa.g.sc109.7 Carica papaya HOM05D001613 ORTHO05D043324 9.6e-07 57.0 54 53.7
vmacro16987 Vaccinium macrocarpon HOM05D001613 ORTHO05D001556 9.6e-07 57.0 68 47.1
Ciclev10009238m.g Citrus clementina HOM05D001613 ORTHO05D001556 1.6e-06 56.2 79 38.0
MELO3C003471.2 Cucumis melo HOM05D001613 ORTHO05D001556 1.6e-06 56.2 81 38.3
PSO210G0763 Papaver somniferum HOM05D001613 ORTHO05D001556 1.6e-06 56.2 73 39.7
QL12p041074 Quercus lobata HOM05D001613 ORTHO05D001556 1.6e-06 56.2 77 36.4
Dinv27919 Davidia involucrata HOM05D001613 ORTHO05D001556 2.1e-06 55.8 78 37.2
Thhalv10008534m.g Eutrema salsugineum HOM05D001613 ORTHO05D001556 2.8e-06 55.5 50 50.0
RcHm_v2.0_Chr2g0140241 Rosa chinensis HOM05D001613 ORTHO05D001556 2.8e-06 55.5 86 39.5
HanXRQChr04g0095891 Helianthus annuus HOM05D001613 ORTHO05D001556 3.7e-06 55.1 110 35.5
arahy.Tifrunner.gnm1.ann1.4S52N9 Arachis hypogaea HOM05D001613 ORTHO05D001556 6.2e-06 54.3 63 38.1
arahy.Tifrunner.gnm1.ann1.Y004SP Arachis hypogaea HOM05D001613 ORTHO05D001556 6.2e-06 54.3 63 38.1
COL.COLO4_20993 Corchorus olitorius HOM05D001613 ORTHO05D001556 8.2e-06 53.9 82 35.4
Manes.16G074000 Manihot esculenta HOM05D001613 ORTHO05D001556 8.2e-06 53.9 97 34.0
PSO210G3138 Papaver somniferum HOM05D001613 ORTHO05D001556 8.2e-06 53.9 73 38.4


User provided reference genes

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