Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 4.7e-191 671.0 334 100.0
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.2e-175 619.8 334 93.7
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 6.6e-153 544.3 336 81.8
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 6.6e-153 544.3 338 80.2
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.3e-148 530.0 338 77.5
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 7.6e-141 504.2 329 75.7
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 2.5e-139 499.2 337 73.3
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 2.7e-138 495.7 332 75.6
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.0e-137 493.8 335 74.0
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.3e-137 493.4 334 74.0
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.5e-136 490.0 331 73.4
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.9e-136 489.6 336 74.1
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.3e-136 488.4 333 73.3
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.3e-135 486.9 332 74.1
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 2.8e-135 485.7 333 72.4
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.4e-134 483.4 336 72.0
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 5.3e-134 481.5 333 73.0
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 9.0e-134 480.7 332 73.2
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 2.6e-133 479.2 333 72.1
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 5.8e-133 478.0 328 71.6
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.1e-131 473.8 331 72.5
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 2.5e-131 472.6 328 71.0
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 7.2e-131 471.1 337 70.0
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.2e-130 470.3 332 72.3
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.6e-130 469.9 332 72.0
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 2.7e-130 469.2 330 70.3
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.7e-130 469.2 330 70.3
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.3e-129 466.8 330 69.7
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.3e-129 466.1 330 71.8
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 3.9e-129 465.3 331 71.9
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 1.1e-128 463.8 329 69.3
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.5e-128 463.4 337 70.6
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 2.5e-128 462.6 328 70.4
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 5.7e-128 461.5 335 70.4
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 5.7e-128 461.5 332 69.9
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.6e-127 459.9 330 69.4
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 4.8e-127 458.4 332 69.0
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 8.2e-127 457.6 332 70.2
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 8.2e-127 457.6 334 69.2
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.1e-126 457.2 337 68.8
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 1.1e-126 457.2 329 68.7
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 3.1e-126 455.7 332 69.3
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.3e-126 454.9 331 69.8
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 2.0e-125 453.0 350 66.9
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 5.9e-125 451.4 332 69.0
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 5.9e-125 451.4 331 68.9
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.7e-124 449.9 335 68.1
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 2.2e-124 449.5 330 68.2
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 5.0e-124 448.4 327 69.7
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 8.5e-124 447.6 331 66.8
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.1e-123 447.2 376 63.6
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.9e-123 446.4 331 66.5
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 3.2e-123 445.7 333 69.7
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 5.5e-123 444.9 333 67.0
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 7.2e-123 444.5 335 66.9
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 1.8e-121 439.9 331 68.0
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 2.3e-121 439.5 355 65.1
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 5.7e-120 434.9 332 65.4
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.3e-119 433.7 332 66.6
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.3e-119 433.7 332 66.6
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 2.2e-119 433.0 328 67.7
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 4.1e-118 428.7 320 70.6
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 9.1e-118 427.6 345 63.8
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 9.1e-118 427.6 332 64.5
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.3e-116 423.7 340 63.5
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 4.7e-114 415.2 329 63.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.3e-113 412.9 332 64.2
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 3.3e-112 409.1 337 64.1
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.6e-109 400.2 293 69.3
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.0e-108 397.5 331 63.1
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 1.7e-108 396.7 331 63.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 7.2e-107 391.3 339 59.0
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.1e-106 389.8 332 60.8
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 2.7e-106 389.4 334 59.3
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 3.6e-106 389.0 330 61.2
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 2.3e-105 386.3 326 61.0
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 8.8e-105 384.4 326 60.4
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 2.0e-104 383.3 326 61.0
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.0e-104 383.3 331 61.0
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 4.4e-104 382.1 326 60.7
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 5.7e-104 381.7 326 59.8
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 7.5e-104 381.3 326 60.7
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 7.5e-104 381.3 326 60.7
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 7.5e-104 381.3 240 79.2
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 4.1e-102 375.6 334 59.3
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 7.0e-102 374.8 332 58.4
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.0e-101 373.2 329 57.1
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.9e-100 369.4 350 55.7
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 6.5e-100 368.2 303 64.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 8.5e-100 367.9 332 59.3
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 9.4e-99 364.4 324 59.6
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 6.1e-98 361.7 337 54.9
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 8.8e-97 357.8 336 57.4
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.7e-95 353.6 332 56.6
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.3e-95 351.3 301 63.5
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 7.3e-83 311.6 331 52.9
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 7.5e-80 301.6 245 65.7
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-75 287.3 364 43.1
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 7.3e-75 285.0 270 55.2
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 6.2e-74 282.0 337 46.6
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 1.0e-68 264.6 183 73.2
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 2.3e-65 253.4 311 46.6
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 5.8e-64 248.8 465 36.8
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.5e-59 233.4 150 74.0
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 7.6e-56 221.9 332 41.0
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.1e-54 218.0 187 61.5
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 5.4e-54 215.7 335 37.9
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 7.1e-54 215.3 167 67.7
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.5e-40 171.0 176 54.0
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.0e-36 156.8 147 52.4
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.9e-36 156.4 173 45.7
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.3e-34 151.4 160 48.1
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 6.2e-34 149.1 151 51.7
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 4.2e-30 136.3 150 46.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 5.6e-27 125.9 81 72.8
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 1.3e-26 124.8 79 73.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.2e-21 108.2 60 78.3
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 4.1e-17 93.2 132 40.9
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.7e-15 87.8 58 72.4
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.4e-14 84.7 70 55.7
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 2.7e-13 80.5 133 42.1
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 4.6e-13 79.7 57 64.9
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 1.0e-12 78.6 60 73.3
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 8.5e-07 58.9 77 42.9
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 1.9e-06 57.8 81 43.2
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 3.2e-06 57.0 80 46.2


User provided reference genes

Program Settings