Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 7.5e-209 730.7 501 100.0
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.0e-206 722.6 504 96.2
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.4e-162 576.2 507 79.5
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.1e-156 557.4 508 68.9
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.7e-152 543.5 437 74.6
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.7e-152 543.5 412 76.5
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 6.0e-150 535.0 421 75.8
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 7.9e-150 534.6 420 74.8
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.0e-149 534.3 421 75.8
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 4.3e-148 528.9 421 75.1
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 8.2e-147 524.6 519 69.0
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 6.9e-146 521.5 417 81.8
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 1.0e-144 517.7 396 78.8
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.0e-144 517.7 430 69.5
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 1.4e-143 513.8 422 69.9
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 4.2e-143 512.3 524 70.6
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.0e-141 506.1 417 72.2
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.5e-140 503.8 434 69.4
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 2.5e-140 503.1 431 68.0
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.5e-140 503.1 480 69.6
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.3e-140 502.7 517 68.9
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 4.3e-140 502.3 424 71.9
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 4.8e-139 498.8 428 66.6
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.8e-138 496.9 428 68.2
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.8e-138 496.9 424 73.8
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 3.1e-138 496.1 438 68.5
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.2e-137 494.2 542 66.1
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.5e-137 493.8 421 67.9
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 4.5e-137 492.3 429 65.5
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.9e-137 491.9 433 65.8
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.3e-136 490.7 437 70.5
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.2e-136 490.0 434 65.7
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.9e-136 489.6 433 67.0
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 3.8e-136 489.2 430 68.4
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.4e-135 487.3 426 66.2
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 1.4e-135 487.3 514 67.1
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 2.5e-135 486.5 389 77.1
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 7.2e-135 485.0 508 67.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 4.7e-134 482.3 386 69.2
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 7.9e-134 481.5 432 70.6
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 7.9e-134 481.5 412 71.4
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.8e-133 480.3 434 65.7
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.8e-133 480.3 417 71.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 3.0e-133 479.6 330 76.1
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.1e-132 477.6 433 67.7
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 2.0e-132 476.9 519 67.2
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 2.8e-131 473.0 428 70.6
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 8.2e-131 471.5 431 68.0
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 2.0e-129 466.8 429 64.1
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 5.9e-129 465.3 417 64.3
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.0e-128 464.5 447 64.0
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 1.3e-128 464.2 418 71.1
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.9e-128 463.0 429 66.9
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 6.5e-128 461.8 391 68.3
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.9e-127 460.3 420 64.3
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 5.5e-127 458.8 524 65.8
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.6e-126 457.2 476 58.4
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 2.1e-126 456.8 366 77.0
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.0e-125 454.5 434 65.2
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 3.9e-125 452.6 419 65.4
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.1e-124 451.1 427 65.6
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-124 451.1 427 65.6
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-124 451.1 428 67.5
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.3e-123 445.3 450 58.4
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 6.3e-123 445.3 414 62.8
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.4e-122 444.1 427 67.4
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.8e-122 443.7 306 74.5
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 2.4e-122 443.4 415 68.2
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 5.3e-122 442.2 446 63.7
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 7.0e-122 441.8 434 66.1
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.6e-121 440.7 423 67.4
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 4.5e-121 439.1 519 63.8
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.7e-120 437.2 377 72.4
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 6.5e-120 435.3 342 73.1
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 9.4e-119 431.4 419 67.3
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 8.0e-118 428.3 669 46.2
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 1.8e-117 427.2 430 65.3
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 4.0e-117 426.0 424 66.0
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.5e-116 424.1 377 70.0
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 7.5e-116 421.8 424 65.6
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 4.1e-114 416.0 517 60.5
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 7.7e-113 411.8 433 60.5
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 5.0e-112 409.1 332 67.2
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 6.5e-112 408.7 419 57.8
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 6.5e-112 408.7 336 68.2
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.7e-110 403.3 429 61.5
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 2.7e-110 403.3 429 61.3
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 5.2e-109 399.1 395 61.3
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 9.8e-108 394.8 382 67.3
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.7e-107 392.9 278 74.5
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 5.4e-106 389.0 290 69.0
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 7.0e-106 388.7 427 64.9
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 9.1e-106 388.3 554 50.0
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 2.7e-105 386.7 436 62.4
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 3.5e-105 386.3 429 64.1
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 5.9e-105 385.6 407 61.4
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.6e-102 377.5 434 55.5
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 8.0e-102 375.2 426 59.4
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 2.3e-101 373.6 340 67.6
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.5e-100 370.9 425 54.8
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 4.4e-100 369.4 427 54.3
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 9.8e-100 368.2 357 66.7
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.1e-98 364.8 239 78.2
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 5.4e-98 362.5 355 66.2
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 7.0e-98 362.1 432 57.6
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 7.0e-98 362.1 432 57.6
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.6e-92 343.6 427 54.8
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 8.3e-91 338.6 338 61.2
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 3.9e-88 329.7 251 68.9
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 7.5e-84 315.5 432 52.3
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 1.2e-81 308.1 423 50.4
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 4.6e-81 306.2 434 48.4
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.1e-79 301.6 341 51.9
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 4.7e-70 269.6 390 49.5
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 8.4e-67 258.8 404 41.3
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.5e-63 248.1 411 44.0
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.3e-63 246.9 227 58.1
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 2.8e-62 243.8 205 57.6
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 1.8e-61 241.1 213 60.1
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 7.6e-52 209.1 358 41.3
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 7.1e-50 202.6 431 37.4
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.7e-43 181.4 132 75.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 3.9e-40 170.2 338 36.4
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.1e-37 162.2 194 59.8
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.2e-28 132.1 204 57.4
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 7.7e-28 129.4 204 56.4
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.3e-27 128.6 204 55.9
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 8.5e-27 125.9 70 87.1
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.1e-15 89.0 84 58.3
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 7.0e-13 79.7 332 25.9
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 4.5e-12 77.0 95 47.4
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 4.5e-12 77.0 95 47.4
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 5.0e-11 73.6 43 74.4
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 1.8e-08 65.1 109 40.4
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.6e-07 61.2 96 42.7
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 9.7e-07 59.3 36 80.6
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 1.3e-06 58.9 217 31.3
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 2.2e-06 58.2 425 25.9


User provided reference genes

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