Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 5.8e-149 530.8 256 100.0
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.7e-138 495.4 291 85.2
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.7e-138 495.4 291 85.2
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 9.7e-120 433.7 280 76.1
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 1.4e-118 429.9 282 74.1
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 3.0e-113 412.1 282 72.3
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 6.3e-111 404.4 282 70.9
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 3.8e-108 395.2 276 69.9
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 3.8e-108 395.2 280 68.2
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 4.2e-107 391.7 276 69.6
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 1.6e-106 389.8 280 67.5
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 3.6e-106 388.7 284 67.6
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 6.1e-106 387.9 280 66.8
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 8.0e-106 387.5 280 68.6
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 8.0e-106 387.5 282 68.1
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 1.0e-105 387.1 280 68.6
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 1.4e-105 386.7 282 68.1
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 1.8e-105 386.3 276 67.4
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.3e-105 386.0 284 67.6
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.0e-105 385.6 284 66.9
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 3.0e-105 385.6 284 66.9
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 3.0e-105 385.6 276 67.4
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 5.2e-105 384.8 284 66.9
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 6.7e-105 384.4 282 67.0
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 6.7e-105 384.4 284 67.6
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 8.8e-105 384.0 276 67.8
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.5e-104 383.3 284 67.3
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 2.6e-104 382.5 276 67.8
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 3.3e-104 382.1 276 68.8
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 9.7e-104 380.6 280 66.4
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 9.7e-104 380.6 280 66.8
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 1.3e-103 380.2 280 66.1
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 1.3e-103 380.2 276 67.0
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 1.7e-103 379.8 276 67.0
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.7e-103 379.8 282 65.6
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 2.8e-103 379.0 280 65.4
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 2.8e-103 379.0 276 68.5
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 4.8e-103 378.3 277 67.5
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 6.3e-103 377.9 281 66.2
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 6.3e-103 377.9 280 65.0
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 6.3e-103 377.9 282 65.6
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 8.2e-103 377.5 280 66.8
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 1.4e-102 376.7 280 65.7
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 1.8e-102 376.3 280 66.4
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 2.4e-102 375.9 281 65.1
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 4.1e-102 375.2 280 64.6
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 5.3e-102 374.8 309 61.5
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 5.3e-102 374.8 282 63.1
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 1.6e-101 373.2 280 65.0
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 1.6e-101 373.2 280 65.4
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 3.5e-101 372.1 280 65.0
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 3.5e-101 372.1 283 62.5
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 2.2e-100 369.4 283 65.0
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 2.9e-100 369.0 302 61.6
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 3.8e-100 368.6 280 63.9
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 1.1e-99 367.1 280 63.6
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 1.5e-99 366.7 285 62.8
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 1.9e-99 366.3 276 65.6
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 4.2e-99 365.2 282 62.8
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 5.5e-99 364.8 232 74.1
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.2e-98 363.6 280 63.6
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 3.6e-98 362.1 275 63.3
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 6.1e-98 361.3 274 65.7
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 8.0e-98 360.9 274 62.8
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 1.4e-97 360.1 278 65.5
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 3.0e-97 359.0 282 61.7
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 5.2e-97 358.2 280 61.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 8.8e-97 357.5 265 66.4
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 1.2e-96 357.1 280 60.4
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 2.6e-96 355.9 283 62.9
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 5.7e-96 354.8 280 62.5
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 1.7e-95 353.2 280 61.1
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 1.7e-95 353.2 280 61.1
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 2.8e-95 352.4 280 61.1
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 2.8e-95 352.4 280 61.1
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 2.8e-95 352.4 280 61.1
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 4.8e-95 351.7 280 60.7
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 6.3e-95 351.3 254 69.3
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 8.3e-95 350.9 280 61.1
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 8.3e-95 350.9 275 63.6
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 8.3e-95 350.9 279 64.2
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 8.3e-95 350.9 276 63.0
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 1.4e-94 350.1 276 61.2
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 1.4e-94 350.1 276 64.5
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 5.4e-94 348.2 276 61.2
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 5.4e-94 348.2 276 61.2
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 5.9e-93 344.7 276 60.9
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 5.9e-93 344.7 314 55.4
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 1.3e-92 343.6 285 58.9
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 2.9e-92 342.4 275 61.8
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 5.0e-92 341.7 282 59.2
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 6.6e-92 341.3 249 66.7
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 5.5e-91 338.2 276 62.7
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.2e-90 337.0 308 55.2
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 2.8e-90 335.9 277 59.6
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 2.8e-90 335.9 277 59.6
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 1.4e-89 333.6 282 56.0
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 6.8e-89 331.3 282 57.8
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.5e-88 330.1 286 57.7
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 2.0e-88 329.7 283 58.0
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 2.0e-88 329.7 282 60.3
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 2.6e-88 329.3 282 57.1
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 3.4e-88 328.9 287 58.2
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 9.8e-88 327.4 280 56.8
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 3.7e-87 325.5 282 57.1
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 6.3e-87 324.7 282 56.7
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.4e-86 322.8 280 56.8
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 2.4e-86 322.8 282 56.4
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 3.1e-86 322.4 282 56.4
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 3.1e-86 322.4 282 56.4
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 3.1e-86 322.4 280 56.8
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 5.4e-86 321.6 280 55.4
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 9.2e-86 320.9 282 55.3
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 9.2e-86 320.9 234 62.8
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 3.5e-85 318.9 244 61.9
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.7e-84 316.6 280 53.9
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 6.6e-84 314.7 280 55.4
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 2.5e-83 312.8 281 53.7
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.2e-82 310.5 327 52.3
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 6.1e-82 308.1 275 58.2
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 1.8e-81 306.6 322 52.5
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 4.9e-79 298.5 283 50.5
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 1.4e-78 297.0 179 78.2
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 1.4e-78 297.0 410 42.9
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 7.0e-78 294.7 173 79.2
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 1.6e-74 283.5 283 54.1
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 1.3e-71 273.9 197 69.0
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.3e-68 263.8 158 77.8
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 2.1e-66 256.5 271 46.1
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.0e-65 252.3 229 54.6
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.0e-65 252.3 229 54.1
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 6.8e-65 251.5 196 62.8
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 9.2e-62 241.1 196 59.2
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 1.9e-59 233.4 183 65.6
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.2e-54 216.1 205 50.2
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 6.0e-45 185.3 283 38.9
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 6.0e-45 185.3 283 38.9
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 6.0e-45 185.3 283 38.9
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.1e-43 181.0 209 42.6
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 2.3e-36 156.8 220 41.8
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 3.0e-36 156.4 266 37.6
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 6.7e-36 155.2 205 42.9
vmacro12470 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 6.7e-36 155.2 113 69.0
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 1.5e-35 154.1 227 40.1
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 1.4e-30 137.5 200 42.0
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 1.4e-30 137.5 80 80.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.2e-30 136.3 220 33.6
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 6.0e-29 132.1 164 41.5
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-28 129.0 181 38.1
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 8.7e-28 128.3 216 33.8
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 8.7e-28 128.3 125 48.8
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 1.5e-27 127.5 229 34.1
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 2.5e-27 126.7 94 63.8
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 6.2e-26 122.1 94 55.3
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 6.9e-25 118.6 152 42.8
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 9.0e-25 118.2 215 31.2
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 2.6e-24 116.7 70 77.1
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 5.8e-24 115.5 159 38.4
Sed0013629 Sechium edule HOM05D003906 ORTHO05D004776 2.9e-23 113.2 233 32.6
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.2e-21 107.8 202 29.2
RcHm_v2.0_Chr7g0228471 Rosa chinensis HOM05D003906 ORTHO05D004776 1.3e-20 104.4 102 52.9
Nn3g18941 Nelumbo nucifera HOM05D003906 ORTHO05D004776 3.7e-18 96.3 118 44.9
ClCG08G000300 Citrullus lanatus HOM05D003906 ORTHO05D004776 1.4e-17 94.4 103 48.5
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 1.7e-10 70.9 189 30.2
SEGI_20889 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.4e-06 57.8 79 36.7
Gohir.A13G059533 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.5e-06 57.0 41 61.0
Gohir.D10G179233 Gossypium hirsutum HOM05D003906 ORTHO05D029892 2.5e-06 57.0 41 61.0
Gohir.D13G134850 Gossypium hirsutum HOM05D003906 ORTHO05D029892 2.5e-06 57.0 41 61.0
Gorai.006G003400 Gossypium raimondii HOM05D003906 ORTHO05D029892 2.5e-06 57.0 41 61.0


User provided reference genes

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