Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005140 Camellia sinensis var. sinensis HOM05D002508 ORTHO05D008845 1.1e-142 510.0 272 100.0
CSS0050305 Camellia sinensis var. sinensis HOM05D002508 ORTHO05D008845 6.0e-128 461.1 263 96.2
Actinidia03640 Actinidia chinensis HOM05D002508 ORTHO05D008845 1.5e-57 227.3 266 56.4
Rhsim04G0075000 Rhododendron simsii HOM05D002508 ORTHO05D008845 2.6e-46 189.9 267 50.6
Dinv12385 Davidia involucrata HOM05D002508 ORTHO05D008845 4.1e-44 182.6 279 47.7
Dinv07682 Davidia involucrata HOM05D002508 ORTHO05D008845 1.2e-43 181.0 274 47.1
Hma1.2p1_0178F.1_g078670 Hydrangea macrophylla HOM05D002508 ORTHO05D008845 1.7e-42 177.2 268 44.4
vmacro09209 Vaccinium macrocarpon HOM05D002508 ORTHO05D008845 5.1e-42 175.6 274 48.2
TAR627G0654 Trochodendron aralioides HOM05D002508 ORTHO05D008845 1.9e-36 157.1 303 42.6
Nitab4.5_0006142g0030 Nicotiana tabacum HOM05D002508 ORTHO05D008845 1.9e-33 147.1 268 41.0
Lsat_1_v5_gn_5_5261 Lactuca sativa HOM05D002508 ORTHO05D008845 4.3e-33 146.0 276 40.2
MD17G1265500 Malus domestica HOM05D002508 ORTHO05D008845 6.2e-32 142.1 274 40.9
Nitab4.5_0002027g0210 Nicotiana tabacum HOM05D002508 ORTHO05D008845 6.2e-32 142.1 268 40.3
TWI59G1098 Tripterygium wilfordii HOM05D002508 ORTHO05D008845 8.1e-32 141.7 286 40.6
Haze_13415 Corylus avellana HOM05D002508 ORTHO05D008845 1.4e-31 141.0 267 39.3
Hma1.2p1_0178F.1_g078690 Hydrangea macrophylla HOM05D002508 ORTHO05D008845 2.4e-31 140.2 242 41.3
Nn6g33711 Nelumbo nucifera HOM05D002508 ORTHO05D008845 3.1e-31 139.8 302 39.4
Prupe.3G115600 Prunus persica HOM05D002508 ORTHO05D008845 3.1e-31 139.8 274 40.9
QL08p042161 Quercus lobata HOM05D002508 ORTHO05D008845 6.9e-31 138.7 268 39.2
CiPaw.03G194200 Carya illinoinensis HOM05D002508 ORTHO05D008845 1.2e-30 137.9 272 38.2
Ca_18865_v3 Cicer arietinum L. HOM05D002508 ORTHO05D008845 3.4e-30 136.3 275 38.2
MD11G1004300 Malus domestica HOM05D002508 ORTHO05D008845 4.4e-30 136.0 269 38.7
Cc05_g08460 Coffea canephora HOM05D002508 ORTHO05D008845 1.7e-29 134.0 266 39.5
MBI06_g13023_MAGBIO Magnolia biondii HOM05D002508 ORTHO05D008845 3.8e-29 132.9 278 39.2
Sed0016392 Sechium edule HOM05D002508 ORTHO05D008845 6.4e-29 132.1 270 37.4
ATR0012G045 Amborella trichopoda HOM05D002508 ORTHO05D008845 8.4e-29 131.7 295 38.0
Thhalv10016743m.g Eutrema salsugineum HOM05D002508 ORTHO05D008845 1.4e-28 131.0 268 39.6
Psat7g163880 Pisum sativum HOM05D002508 ORTHO05D008845 1.4e-28 131.0 269 37.2
AUR62034062 Chenopodium quinoa HOM05D002508 ORTHO05D008845 4.2e-28 129.4 264 39.0
HanXRQChr09g0260281 Helianthus annuus HOM05D002508 ORTHO05D008845 4.2e-28 129.4 268 38.8
PGR142G0587 Punica granatum HOM05D002508 ORTHO05D008845 4.2e-28 129.4 272 39.0
HPP92_020066 Vanilla planifolia HOM05D002508 ORTHO05D008845 4.2e-28 129.4 279 38.7
arahy.Tifrunner.gnm1.ann1.KK31MU Arachis hypogaea HOM05D002508 ORTHO05D008845 1.6e-27 127.5 274 38.7
Lj3g0003002 Lotus japonicus HOM05D002508 ORTHO05D008845 1.6e-27 127.5 268 39.9
Migut.H02144 Erythranthe guttata HOM05D002508 ORTHO05D008845 2.1e-27 127.1 274 37.2
Aqoxy2G02157 Aquilegia oxysepala HOM05D002508 ORTHO05D008845 2.7e-27 126.7 287 36.2
THA.LOC104823930 Tarenaya hassleriana HOM05D002508 ORTHO05D008845 2.7e-27 126.7 276 37.7
Carub.0004s2515 Capsella rubella HOM05D002508 ORTHO05D008845 3.5e-27 126.3 268 38.1
Hund25053 Selenicereus undatus HOM05D002508 ORTHO05D008845 3.5e-27 126.3 265 39.2
PSO063G6143 Papaver somniferum HOM05D002508 ORTHO05D008845 4.6e-27 125.9 294 37.4
PSO782G1110 Papaver somniferum HOM05D002508 ORTHO05D008845 7.8e-27 125.2 295 38.3
arahy.Tifrunner.gnm1.ann1.T59EZC Arachis hypogaea HOM05D002508 ORTHO05D008845 1.3e-26 124.4 273 36.3
Gohir.A03G182700 Gossypium hirsutum HOM05D002508 ORTHO05D008845 2.3e-26 123.6 267 35.6
Gohir.D02G204300 Gossypium hirsutum HOM05D002508 ORTHO05D008845 2.3e-26 123.6 267 35.6
Glyma.12G129400 Glycine max HOM05D002508 ORTHO05D008845 3.0e-26 123.2 265 38.5
Manes.01G132100 Manihot esculenta HOM05D002508 ORTHO05D008845 3.0e-26 123.2 199 41.2
ClCG07G012090 Citrullus lanatus HOM05D002508 ORTHO05D008845 3.9e-26 122.9 268 35.4
Medtr4g080120 Medicago truncatula HOM05D002508 ORTHO05D008845 3.9e-26 122.9 269 37.2
Atru.chr6.2771_Atru.chr6.2772 Acer truncatum HOM05D002508 ORTHO05D008845 8.7e-26 121.7 275 36.7
CAN.G1716.5 Capsicum annuum HOM05D001556 ORTHO05D001505 8.7e-26 121.7 142 51.4
AUR62033012 Chenopodium quinoa HOM05D002508 ORTHO05D008845 1.9e-25 120.6 182 45.1
Sopen12g005740 Solanum pennellii HOM05D002508 ORTHO05D008845 4.3e-25 119.4 182 41.2
Eucgr.K01141 Eucalyptus grandis HOM05D002508 ORTHO05D008845 5.6e-25 119.0 281 35.2
Sc06g0002080 Simmondsia chinensis HOM05D002508 ORTHO05D008845 7.3e-25 118.6 187 41.7
unitig_27.g25146 Utricularia gibba HOM05D002508 ORTHO05D008845 9.6e-25 118.2 189 43.9
Ciclev10017936m.g Citrus clementina HOM05D002508 ORTHO05D008845 1.6e-24 117.5 273 37.4
AL4G41270 Arabidopsis lyrata HOM05D002508 ORTHO05D008845 2.1e-24 117.1 268 37.7
Glyma.06G276000 Glycine max HOM05D002508 ORTHO05D008845 2.1e-24 117.1 265 37.7
AT2G42710 Arabidopsis thaliana HOM05D002508 ORTHO05D008845 2.8e-24 116.7 184 43.5
ECA232G1095 Erigeron canadensis HOM05D002508 ORTHO05D008845 2.8e-24 116.7 226 39.4
THA.LOC104803004 Tarenaya hassleriana HOM05D002508 ORTHO05D008845 3.6e-24 116.3 274 35.8
Lalb_Chr03g0030001 Lupinus albus HOM05D002508 ORTHO05D008845 6.2e-24 115.5 243 39.5
VMungo1127G2150 Vigna mungo HOM05D002508 ORTHO05D008845 6.2e-24 115.5 267 36.7
Phvul.011G128300 Phaseolus vulgaris HOM05D002508 ORTHO05D008845 1.4e-23 114.4 265 38.1
CARHR137810 Cardamine hirsuta HOM05D002508 ORTHO05D008845 2.4e-23 113.6 269 37.2
Duzib264G0378 Durio zibethinus HOM05D002508 ORTHO05D008845 2.4e-23 113.6 241 36.1
Solyc12g013990.3 Solanum lycopersicum HOM05D002508 ORTHO05D008845 2.4e-23 113.6 141 45.4
COL.COLO4_33600 Corchorus olitorius HOM05D002508 ORTHO05D008845 5.3e-23 112.5 146 45.9
MELO3C017830.2 Cucumis melo HOM05D002508 ORTHO05D008845 1.2e-22 111.3 268 35.8
Peaxi162Scf00229g01118 Petunia axillaris HOM05D002508 ORTHO05D008845 1.2e-22 111.3 267 35.2
CDE02G4709 Ceratophyllum demersum HOM05D002508 ORTHO05D008845 2.0e-22 110.5 283 37.5
Cpa.g.sc82.2 Carica papaya HOM05D002508 ORTHO05D008845 5.8e-22 109.0 145 48.3
SHI10508 Sapria himalayana HOM05D002508 ORTHO05D008845 7.6e-22 108.6 239 36.0
Gorai.005G231600 Gossypium raimondii HOM05D002508 ORTHO05D008845 1.3e-21 107.8 266 33.8
RcHm_v2.0_Chr2g0130111 Rosa chinensis HOM05D002508 ORTHO05D008845 1.7e-21 107.5 262 35.5
Oeu053248.1 Olea europaea HOM05D000134 ORTHO05D003318 8.4e-21 105.1 210 37.6
FAN09G4070 Fragaria x ananassa HOM05D002508 ORTHO05D008845 3.2e-20 103.2 260 36.2
FAN02G3352 Fragaria x ananassa HOM05D002508 ORTHO05D008845 4.2e-20 102.8 263 35.4
BraA05t19322Z Brassica rapa HOM05D002508 ORTHO05D008845 2.1e-19 100.5 141 46.1
Potri.014G143000 Populus trichocarpa HOM05D002508 ORTHO05D008845 3.5e-19 99.8 186 39.8
C04p03910 Brassica napus HOM05D002508 ORTHO05D008845 4.6e-19 99.4 141 45.4
BolC4t22027H Brassica oleracea HOM05D002508 ORTHO05D008845 4.6e-19 99.4 141 45.4
A05p03340 Brassica napus HOM05D002508 ORTHO05D008845 7.9e-19 98.6 268 33.2
Os06g0546400 Oryza sativa ssp. japonica HOM05D002508 ORTHO05D008845 1.0e-18 98.2 153 47.1
FAN05G1307 Fragaria x ananassa HOM05D002508 ORTHO05D008845 1.8e-18 97.4 268 34.3
CsaV3_4G002060 Cucumis sativus L. HOM05D002508 ORTHO05D008845 2.3e-18 97.1 272 34.9
Aa31LG10G13280 Aethionema arabicum HOM05D002508 ORTHO05D008845 6.7e-18 95.5 335 31.3
TPR.G13813 Trifolium pratense HOM05D002508 ORTHO05D008845 6.7e-18 95.5 185 37.8
EL10Ac8g19416 Beta vulgaris HOM05D002508 ORTHO05D008845 1.1e-17 94.7 182 39.0
Thecc.01G152800 Theobroma cacao HOM05D002508 ORTHO05D008845 1.5e-17 94.4 276 31.9
Zm00001eb383810 Zea mays HOM05D002508 ORTHO05D008845 1.5e-17 94.4 188 42.0
Oeu024443.1 Olea europaea HOM05D002508 ORTHO05D008845 2.5e-17 93.6 138 45.7
SalBow7G1898 Salvia bowleyana HOM05D002508 ORTHO05D008845 4.3e-17 92.8 264 31.8
FvH4_6g27601 Fragaria vesca HOM05D002508 ORTHO05D008845 5.6e-17 92.4 263 33.5
SGA_v2.0_scaffold130G34199 Striga asiatica HOM05D002508 ORTHO05D008845 1.2e-14 84.7 322 29.2
HPP92_020036 Vanilla planifolia HOM05D002508 ORTHO05D008845 1.5e-14 84.3 227 35.7
CDE04G1342 Ceratophyllum demersum HOM05D002508 ORTHO05D008845 5.8e-14 82.4 163 43.6
GSVIVG01020727001 Vitis vinifera HOM05D002508 ORTHO05D008845 9.9e-14 81.6 81 49.4
Hund12363 Selenicereus undatus HOM05D002508 ORTHO05D008845 1.0e-10 71.6 76 50.0
SEGI_05268 Sequoiadendron giganteum HOM05D002508 ORTHO05D008845 2.3e-10 70.5 305 28.5
SMO347G0589 Selaginella moellendorffii HOM05D002508 ORTHO05D003616 3.4e-06 56.6 124 37.1


User provided reference genes

Program Settings