Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-48 194.9 95 100.0
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-36 156.4 97 83.5
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-34 149.1 106 76.4
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.6e-30 135.2 97 72.2
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.7e-29 132.5 97 72.2
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.8e-26 122.5 96 65.6
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.8e-26 122.5 96 64.6
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.0e-26 121.7 96 64.6
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-26 121.3 96 65.6
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-26 121.3 96 65.6
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 6.7e-26 120.6 98 64.3
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 8.8e-26 120.2 96 63.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.6e-25 118.6 96 63.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.6e-25 118.6 96 63.5
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 5.7e-25 117.5 95 66.3
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 7.5e-25 117.1 94 66.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.7e-24 114.8 98 61.2
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.8e-24 114.4 94 62.8
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.8e-24 114.4 94 62.8
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.3e-24 114.0 94 62.8
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.2e-24 113.6 94 62.8
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-23 113.2 94 62.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.1e-23 113.2 94 62.8
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.1e-23 113.2 94 63.8
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.4e-23 112.8 92 63.0
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.8e-23 112.5 96 62.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.8e-23 112.5 97 60.8
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.4e-23 112.1 94 62.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 3.1e-23 111.7 94 63.8
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.1e-23 111.3 94 64.9
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 4.1e-23 111.3 98 60.2
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.2e-22 109.8 94 63.8
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.2e-22 109.8 97 58.8
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.2e-22 109.8 91 62.6
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.6e-22 109.4 94 58.5
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.7e-22 108.6 98 60.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 5.9e-22 107.5 94 58.5
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 5.9e-22 107.5 97 57.7
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.0e-21 106.7 95 62.1
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-21 106.3 94 60.6
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.7e-21 105.9 94 57.4
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.2e-21 105.5 94 61.7
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.9e-21 105.1 97 57.7
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.8e-21 104.8 94 59.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.8e-21 104.8 94 57.4
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.8e-21 104.8 69 71.0
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 5.0e-21 104.4 94 60.6
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 5.0e-21 104.4 94 61.7
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 5.0e-21 104.4 94 59.6
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.5e-21 104.0 93 60.2
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 8.5e-21 103.6 94 61.7
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 8.5e-21 103.6 94 60.6
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.5e-21 103.6 94 61.7
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 8.5e-21 103.6 94 60.6
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 8.5e-21 103.6 94 60.6
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.1e-20 103.2 94 60.6
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.5e-20 102.8 96 58.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.9e-20 102.4 91 59.3
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.5e-20 102.1 94 58.5
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 2.5e-20 102.1 94 57.4
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 5.5e-20 100.9 94 58.5
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 5.5e-20 100.9 97 54.6
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.5e-20 100.9 93 58.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 7.2e-20 100.5 94 57.4
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 7.2e-20 100.5 94 57.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 7.2e-20 100.5 94 58.5
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 7.2e-20 100.5 91 57.1
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 7.2e-20 100.5 93 58.1
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 9.4e-20 100.1 94 58.5
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-19 99.8 94 58.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.2e-19 99.8 94 59.6
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 1.2e-19 99.8 98 57.1
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.2e-19 99.8 98 57.1
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.2e-19 99.8 94 58.5
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.6e-19 99.4 91 57.1
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.6e-19 99.4 94 56.4
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.6e-19 99.4 94 56.4
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.6e-19 99.4 94 56.4
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-19 99.4 94 55.3
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.1e-19 99.0 91 56.0
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.1e-19 99.0 98 56.1
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.1e-19 99.0 94 59.6
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.7e-19 97.8 98 56.1
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 6.1e-19 97.4 94 56.4
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 8.0e-19 97.1 91 57.1
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.0e-18 96.7 93 57.0
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.0e-18 96.7 97 53.6
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-18 96.3 98 55.1
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.4e-18 96.3 93 55.9
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.3e-18 95.5 98 55.1
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 5.2e-18 94.4 94 53.2
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 6.8e-18 94.0 71 60.6
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.8e-18 94.0 98 54.1
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.0e-17 92.4 91 53.8
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.4e-17 91.3 92 50.0
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 5.7e-17 90.9 96 52.1
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 5.7e-17 90.9 92 53.3
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 5.7e-17 90.9 92 52.2
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 5.7e-17 90.9 93 51.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.3e-16 89.7 95 48.4
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.2e-16 89.0 94 51.1
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 2.2e-16 89.0 91 51.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 2.8e-16 88.6 93 54.8
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 3.7e-16 88.2 93 51.6
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 4.8e-16 87.8 93 49.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 4.8e-16 87.8 92 48.9
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 6.3e-16 87.4 93 49.5
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.3e-16 87.4 74 55.4
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 8.3e-16 87.0 93 53.8
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.4e-15 86.3 93 49.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.4e-15 86.3 93 49.5
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.8e-15 85.9 93 48.4
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.4e-15 85.5 98 50.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 2.7e-14 82.0 66 60.6
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.5e-14 81.6 93 49.5
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 4.5e-14 81.3 96 49.0
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 7.7e-14 80.5 93 49.5
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.0e-13 80.1 94 51.1
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 2.3e-13 79.0 121 41.3
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.9e-13 78.6 94 50.0
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 3.8e-13 78.2 93 49.5
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-12 75.5 94 45.7
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.2e-12 75.1 93 46.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.5e-12 73.6 93 47.3
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.0e-11 70.5 54 66.7
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.0e-10 70.1 93 41.9
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 2.3e-10 68.9 104 48.1
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 6.8e-10 67.4 74 48.6
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.0e-09 65.9 98 42.9
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 3.4e-09 65.1 92 40.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.7e-08 61.6 64 50.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 6.3e-08 60.8 80 46.2
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 4.1e-07 58.2 54 55.6


User provided reference genes

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