Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.1e-81 306.6 155 100.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 5.8e-75 284.3 155 91.6
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.7e-74 282.7 155 91.6
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.7e-72 275.4 155 87.1
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 6.0e-72 274.2 155 87.1
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 7.8e-72 273.9 155 87.7
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.0e-71 273.5 156 89.1
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.0e-71 273.5 156 89.1
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.7e-71 272.7 155 86.5
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 3.9e-71 271.6 155 84.5
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 6.6e-71 270.8 155 83.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 85.2
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.9e-70 269.2 155 84.5
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 1.9e-70 269.2 155 83.2
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 1.9e-70 269.2 155 85.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 86.5
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 85.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 7.3e-70 267.3 155 81.9
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 9.5e-70 266.9 155 83.9
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.6e-69 266.2 155 85.8
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.6e-69 266.2 155 86.5
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.6e-69 265.0 155 81.9
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.7e-69 264.6 155 81.3
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 8.0e-69 263.8 154 83.1
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 84.5
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 80.0
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 80.0
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 80.0
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 83.9
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-67 259.6 155 81.9
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.0e-67 259.2 155 81.9
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.0e-67 259.2 155 82.6
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.6e-67 258.8 155 81.3
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.8e-67 257.7 155 81.9
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 7.5e-67 257.3 155 81.3
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.3e-66 256.5 155 78.7
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 76.8
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 76.8
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 79.4
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 78.7
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 78.1
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 77.4
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 77.4
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 81.3
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 7.8e-64 247.3 155 78.1
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 77.4
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 76.1
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 8.6e-63 243.8 155 76.8
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 76.1
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 76.8
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 74.8
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.8e-61 238.8 153 77.1
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 73.5
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 74.2
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 75.5
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 75.5
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.4e-60 236.5 174 67.2
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 74.8
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 76.1
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 74.8
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 74.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 74.8
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.1e-60 235.3 145 78.6
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 73.5
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 73.5
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 73.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 74.2
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 74.8
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 8.9e-60 233.8 155 74.8
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 74.8
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 72.9
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 73.5
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.5e-59 233.0 155 74.8
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 72.3
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 74.2
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 71.0
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.4e-59 231.9 155 72.9
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 7.5e-59 230.7 152 73.0
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.3e-58 229.9 155 72.9
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 2.2e-58 229.2 214 58.9
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 72.9
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 8.3e-58 227.3 150 72.7
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 69.7
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.1e-57 224.9 150 76.7
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 7.1e-57 224.2 152 74.3
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 2.7e-56 222.2 154 69.5
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 71.0
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 71.0
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 3.5e-56 221.9 145 73.8
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 72.3
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.8e-56 220.7 150 76.0
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 7.8e-56 220.7 132 80.3
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.7e-55 219.5 152 72.4
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 6.6e-55 217.6 147 73.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.9e-54 216.1 153 68.6
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 7.3e-54 214.2 136 79.4
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.2e-53 213.4 156 68.6
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.6e-53 213.0 147 72.1
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.6e-53 211.8 127 79.5
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 6.2e-53 211.1 156 67.9
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 2.4e-52 209.1 147 68.7
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.4e-52 209.1 156 66.7
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 4.0e-52 208.4 131 77.1
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 8.9e-52 207.2 156 66.0
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 9.9e-51 203.8 156 66.0
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 2.2e-50 202.6 155 67.1
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.9e-50 202.2 155 65.8
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 4.9e-50 201.4 152 67.8
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.1e-48 196.1 156 62.2
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.7e-47 193.0 188 55.3
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.1e-47 191.4 149 65.1
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 6.6e-47 191.0 163 62.0
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.5e-46 189.9 151 60.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.5e-46 189.1 154 59.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 2.5e-46 189.1 154 59.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.3e-46 188.7 154 59.7
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 5.6e-46 188.0 154 59.1
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.6e-45 186.4 153 58.8
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 9.0e-44 180.6 128 66.4
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 9.9e-43 177.2 114 78.1
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 2.9e-42 175.6 153 58.2
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 3.0e-39 165.6 146 58.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 5.1e-39 164.9 99 81.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 9.6e-38 160.6 103 74.8
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.4e-36 156.8 91 85.7
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 3.1e-36 155.6 109 67.0
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 4.0e-36 155.2 109 67.9
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.5e-35 153.3 144 51.4
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.4e-35 152.1 104 71.2
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 4.6e-32 141.7 83 80.7
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 2.3e-31 139.4 109 66.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 3.0e-31 139.0 148 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.4e-28 130.2 148 46.6
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.0e-26 124.0 128 52.3
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 2.7e-24 115.9 152 46.7
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 4.8e-21 105.1 153 39.9
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-20 104.0 61 83.6
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-20 104.0 61 83.6
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 2.4e-20 102.8 130 45.4
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.4e-17 93.6 68 67.6
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.2e-16 90.5 68 64.7
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.5e-14 83.6 48 81.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.1e-12 77.4 129 34.9
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.0e-06 56.6 40 62.5


User provided reference genes

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