Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 0.0e+00 1165.6 666 100.0
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.3e-285 986.1 666 83.3
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.7e-285 985.7 662 83.8
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.2e-285 985.3 676 79.9
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.3e-276 953.7 526 99.2
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.9e-268 929.1 733 72.7
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.6e-267 926.0 668 74.1
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.8e-267 925.2 668 74.6
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.8e-267 925.2 634 77.6
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 9.8e-265 916.8 629 77.4
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 9.2e-263 910.2 666 74.8
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.0e-262 909.1 609 80.3
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.8e-259 898.7 664 74.7
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 6.2e-259 897.5 652 75.3
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.1e-258 896.7 657 76.6
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.4e-258 896.3 666 72.8
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 4.0e-258 894.8 626 77.2
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 5.8e-257 891.0 652 73.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.9e-256 888.6 604 78.6
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.3e-256 887.1 631 74.8
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.4e-255 886.3 631 74.8
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.0e-253 880.2 617 73.6
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.7e-253 879.4 652 73.3
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 3.9e-253 878.2 614 75.9
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.9e-252 875.9 682 71.0
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.1e-251 872.5 625 74.7
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 1.1e-250 870.2 651 72.0
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.3e-250 869.0 670 76.1
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 5.2e-250 867.8 618 75.6
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.2e-249 866.7 604 76.7
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.3e-248 863.2 677 74.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 6.4e-248 860.9 632 74.1
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.9e-247 859.4 610 75.6
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 9.2e-247 857.1 655 74.2
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.2e-243 846.7 653 74.3
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.2e-243 846.7 672 69.3
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.6e-243 846.3 618 71.7
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.6e-243 845.1 674 70.0
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 2.4e-242 842.4 676 72.6
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.1e-242 842.0 650 73.1
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 6.4e-240 834.3 667 72.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 8.4e-240 833.9 675 69.2
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 3.2e-239 832.0 674 68.0
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.0e-237 827.0 631 71.8
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 3.0e-237 825.5 670 68.7
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.1e-237 824.7 632 71.0
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.6e-237 824.3 674 69.6
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 8.7e-237 823.9 674 69.6
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 8.7e-237 823.9 632 70.4
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 9.6e-236 820.5 674 70.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 9.6e-236 820.5 608 72.9
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.3e-235 820.1 652 69.2
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-235 820.1 632 70.7
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-235 819.3 630 71.3
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 8.1e-235 817.4 651 70.4
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.1e-234 815.5 700 65.6
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.1e-234 815.5 622 71.7
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 9.0e-234 813.9 605 73.6
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.6e-233 812.4 655 69.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 4.5e-233 811.6 673 68.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 9.9e-233 810.4 662 68.6
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.3e-232 810.1 656 68.9
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 6.4e-232 807.7 650 70.6
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 8.4e-232 807.4 632 70.6
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.1e-231 807.0 656 68.8
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 1.4e-231 806.6 616 71.8
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.2e-231 805.4 649 69.0
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 7.1e-231 804.3 655 68.4
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 2.1e-230 802.7 635 69.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 3.9e-229 798.5 656 66.6
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 8.7e-229 797.3 651 67.1
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 8.7e-229 797.3 651 67.1
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 8.7e-229 797.3 651 67.1
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 4.3e-228 795.0 653 67.5
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.3e-227 793.5 630 68.9
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 3.6e-227 792.0 653 67.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 4.8e-227 791.6 669 65.9
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.2e-225 786.9 614 70.2
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.8e-225 784.6 613 69.3
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 5.8e-225 784.6 654 68.2
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.7e-224 783.1 680 65.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.8e-224 781.9 647 66.9
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 4.9e-224 781.6 714 63.4
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 8.4e-224 780.8 662 65.4
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 7.1e-223 777.7 649 66.3
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.6e-222 776.5 614 67.8
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.6e-222 776.5 671 65.6
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.1e-220 770.4 673 65.5
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 8.1e-219 764.2 650 66.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-218 763.8 650 66.9
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.4e-218 763.5 651 66.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.4e-218 763.5 651 66.8
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.1e-218 762.3 651 66.7
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 6.9e-218 761.1 651 65.3
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.6e-217 759.2 650 64.2
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 3.4e-217 758.8 574 73.9
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.2e-216 756.1 614 67.8
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-215 753.8 651 66.2
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.5e-215 752.7 610 69.2
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.6e-214 750.0 651 65.9
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.1e-212 743.8 685 62.9
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.7e-208 729.9 543 71.6
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 5.0e-208 728.4 615 65.4
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.8e-205 719.9 623 65.7
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.3e-205 719.5 659 62.1
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 7.4e-204 714.5 655 62.1
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.4e-202 709.5 673 63.4
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.3e-200 703.7 678 59.3
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.3e-195 687.2 448 89.5
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 6.9e-194 681.4 653 58.8
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 5.9e-193 678.3 563 65.7
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 6.5e-192 674.9 556 68.9
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.5e-192 674.9 476 74.2
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 9.4e-191 671.0 502 72.9
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.4e-189 667.2 506 72.1
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 3.5e-185 652.5 646 60.2
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 2.4e-178 629.8 502 68.9
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.2e-172 610.9 630 57.5
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.7e-163 580.5 657 53.4
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 4.7e-158 562.4 460 69.3
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 4.9e-155 552.4 453 69.3
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.7e-153 546.6 626 49.2
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.5e-151 540.0 503 60.6
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 4.7e-150 535.8 441 65.8
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 5.8e-148 528.9 628 52.9
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 9.8e-148 528.1 552 53.6
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.3e-139 501.1 616 45.6
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 3.6e-126 456.4 399 62.7
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 4.9e-123 446.0 337 70.9
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 4.3e-119 433.0 588 44.4
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 9.6e-119 431.8 421 58.0
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.1e-118 430.6 338 73.4
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 4.5e-116 422.9 658 42.4
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 8.7e-96 355.5 212 96.7
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.5e-87 327.4 313 58.5
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.1e-85 322.0 325 59.4
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.6e-73 281.6 224 65.2
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.4e-69 267.7 657 33.0
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.3e-69 266.5 180 76.7
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 5.0e-67 260.0 242 62.8
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.1e-65 254.6 212 65.1
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.0e-63 248.1 197 64.0
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.2e-60 238.8 165 81.2
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.8e-59 233.8 164 77.4
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.5e-58 229.9 168 71.4
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 4.0e-56 223.8 716 29.6
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.4e-53 214.5 180 63.9
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 2.9e-51 207.6 647 31.4
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.1e-50 205.7 174 63.8
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 1.1e-50 205.7 180 61.1
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 3.6e-49 200.7 151 70.2
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.0e-48 199.1 151 70.2
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.8e-45 188.3 128 77.3
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 4.0e-40 170.6 117 76.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 7.5e-39 166.4 148 64.2
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.2e-37 159.5 137 67.9
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 5.8e-31 140.2 92 79.3
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 5.8e-31 140.2 92 79.3
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 5.8e-31 140.2 92 79.3
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 4.1e-29 134.0 92 76.1
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.7e-28 131.3 185 44.3
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.0e-27 129.4 101 67.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.6e-25 122.1 113 59.3
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.1e-24 117.9 94 70.2
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.2e-20 105.9 98 55.1
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.6e-20 105.5 94 56.4
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.7e-20 104.8 119 54.6
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 3.0e-19 101.3 111 64.0
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.9e-19 100.9 94 55.3
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-17 95.9 114 53.5
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.7e-17 94.0 58 81.0
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.6e-15 88.2 335 31.3
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 3.8e-14 84.3 57 73.7
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 4.9e-14 84.0 73 54.8
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 2.7e-12 78.2 83 47.0
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 6.0e-12 77.0 82 50.0
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.8e-12 76.6 51 68.6
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 3.6e-09 67.8 47 76.6
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 5.3e-08 63.9 48 70.8
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 2.6e-07 61.6 118 34.7
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 7.6e-07 60.1 632 21.0
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 9.9e-07 59.7 47 61.7
Sopen01g018800 Solanum pennellii HOM05D003777 ORTHO05D393350 4.9e-06 57.4 142 35.2


User provided reference genes

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