Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.1e-159 565.1 288 100.0
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.5e-156 555.4 291 97.9
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.2e-142 510.0 291 89.3
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 6.6e-141 504.2 291 88.7
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.6e-139 499.6 290 86.6
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 3.6e-139 498.4 290 85.5
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 4.7e-139 498.0 290 86.6
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.3e-138 495.7 290 85.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.3e-138 495.7 292 87.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 4.0e-138 495.0 290 86.2
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.6e-137 492.3 290 86.2
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 9.8e-137 490.3 290 84.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.3e-136 490.0 290 84.1
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.2e-136 489.2 290 84.8
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 4.9e-136 488.0 290 86.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 8.3e-136 487.3 281 86.8
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.1e-135 486.9 290 85.5
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.4e-135 486.5 290 85.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.4e-135 486.5 290 84.1
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 3.5e-134 481.9 290 84.5
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 6.0e-134 481.1 290 84.5
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.0e-134 481.1 290 84.1
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 6.0e-134 481.1 292 83.2
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 3.9e-133 478.4 290 82.1
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.5e-132 476.5 291 80.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 3.3e-132 475.3 292 82.9
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 3.3e-132 475.3 290 82.1
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 4.3e-132 474.9 292 82.2
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 5.6e-132 474.6 292 83.2
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 7.3e-132 474.2 291 80.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.2e-131 473.4 291 80.1
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-131 473.0 292 83.6
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.1e-131 472.6 290 82.1
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.8e-131 472.2 290 81.0
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 3.6e-131 471.9 290 83.1
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.1e-130 470.3 321 76.9
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 6.8e-130 467.6 290 82.4
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.8e-130 467.6 290 80.3
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.6e-129 465.7 290 81.7
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.3e-128 463.4 290 81.0
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 2.2e-128 462.6 291 81.8
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 6.4e-128 461.1 290 79.7
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.9e-127 459.5 290 79.7
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 2.4e-127 459.1 319 74.9
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 3.2e-127 458.8 304 77.3
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.1e-127 458.4 291 78.7
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.2e-126 456.8 291 77.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 3.5e-126 455.3 295 78.6
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.0e-125 453.8 324 72.2
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.3e-125 452.6 271 84.9
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.3e-125 452.6 292 79.1
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 3.9e-125 451.8 291 79.4
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.9e-125 451.8 290 77.6
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.1e-124 450.3 290 77.6
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.5e-124 449.1 291 79.0
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 3.3e-124 448.7 289 78.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.2e-123 446.8 290 79.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.8e-123 445.7 290 78.3
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.0e-122 441.8 386 65.8
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 5.2e-122 441.4 290 77.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.5e-121 439.9 290 77.9
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.0e-121 439.5 290 76.9
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.0e-121 439.5 291 78.0
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 2.6e-121 439.1 290 77.2
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 7.6e-121 437.6 291 77.0
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 9.9e-121 437.2 290 77.2
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 9.9e-121 437.2 290 76.9
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.6e-118 429.9 291 73.9
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 6.0e-118 427.9 326 69.9
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 7.8e-118 427.6 291 74.6
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.0e-117 427.2 268 78.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 5.1e-117 424.9 292 74.0
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.1e-117 424.9 291 72.5
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 5.1e-117 424.9 290 75.5
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 8.6e-117 424.1 295 74.9
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.5e-116 423.3 290 74.8
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.9e-116 422.9 291 72.9
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.3e-116 422.2 290 72.1
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 3.3e-116 422.2 292 75.0
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 4.3e-116 421.8 294 71.4
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 5.6e-116 421.4 290 74.5
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.6e-115 418.7 290 76.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.4e-114 416.8 291 74.6
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.1e-114 415.6 311 68.8
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.1e-114 415.6 309 68.9
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.2e-113 413.7 293 73.7
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.2e-113 413.7 293 73.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.3e-112 410.2 291 72.9
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.3e-112 410.2 296 69.9
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-112 409.8 290 73.1
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-112 409.8 290 73.1
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.8e-112 408.7 235 87.2
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 4.9e-112 408.3 291 73.2
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 8.4e-112 407.5 290 74.5
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 4.2e-111 405.2 292 73.3
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 4.2e-111 405.2 291 71.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 7.1e-111 404.4 290 70.7
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-110 403.7 290 71.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.1e-110 402.9 283 73.9
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.0e-109 400.6 291 73.2
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.0e-109 399.1 290 72.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.6e-107 393.3 290 71.4
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.4e-106 390.2 291 71.5
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.6e-105 386.0 290 69.3
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.6e-105 386.0 297 68.4
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 3.8e-104 382.1 291 69.8
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 4.9e-104 381.7 293 69.3
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 4.9e-104 381.7 290 70.3
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-103 380.6 293 68.9
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.4e-103 380.2 229 83.8
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.1e-102 376.3 290 67.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 3.9e-101 372.1 293 68.6
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.5e-100 370.2 290 65.9
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 2.8e-99 365.9 298 65.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.0e-98 362.1 290 65.5
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.4e-95 352.8 297 63.6
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.2e-95 352.4 208 85.1
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 5.5e-95 351.7 290 64.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 2.1e-94 349.7 290 67.6
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 3.5e-94 349.0 225 76.9
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.8e-90 336.7 189 88.4
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 4.0e-90 335.5 291 61.5
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 6.9e-90 334.7 229 73.4
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.0e-89 333.2 263 68.1
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 4.5e-89 332.0 239 73.6
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 5.3e-82 308.5 286 58.7
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.5e-79 299.7 285 55.4
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 8.2e-75 284.6 184 75.0
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 3.1e-74 282.7 303 50.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.4e-71 273.9 188 70.2
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 5.5e-71 271.9 298 51.0
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 7.9e-70 268.1 201 68.7
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 6.7e-69 265.0 294 52.0
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 7.2e-63 245.0 291 50.9
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 5.7e-52 208.8 293 46.4
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 5.7e-52 208.8 293 46.4
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 5.7e-52 208.8 293 46.4
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.7e-51 207.2 263 50.6
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 9.8e-44 181.4 151 63.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.7e-43 179.5 103 87.4
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 5.0e-40 169.1 106 79.2
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.3e-37 160.2 231 45.0
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 2.6e-36 156.8 86 90.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.2e-35 153.7 153 58.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 6.3e-35 152.1 153 58.2
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 6.3e-35 152.1 153 58.2
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.3e-32 144.4 194 42.8
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.3e-32 143.7 91 78.0
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.0e-29 132.9 107 61.7
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 8.6e-24 115.2 73 78.1
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 8.6e-24 115.2 73 78.1
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 3.3e-23 113.2 72 77.8
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 4.3e-23 112.8 95 65.3
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 7.5e-20 102.1 188 38.8
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.9e-19 99.4 60 76.7
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.4e-18 97.8 68 72.1
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.0e-16 91.7 81 58.0
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 3.3e-15 86.7 57 73.7
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 7.3e-15 85.5 86 57.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.2e-13 79.3 231 29.9
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 9.8e-12 75.1 56 69.6
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 2.1e-06 57.4 36 69.4
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 2.1e-06 57.4 36 69.4


User provided reference genes

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