Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.7e-222 774.6 408 100.0
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.3e-186 654.1 359 87.7
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.6e-185 652.9 351 88.3
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.8e-184 649.4 362 85.6
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.0e-184 648.3 344 87.5
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.2e-184 647.9 362 85.4
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.5e-183 646.4 356 84.3
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.0e-183 646.0 356 84.0
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 3.4e-183 645.2 345 86.7
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 3.4e-183 645.2 348 87.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 7.5e-183 644.0 348 87.9
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 7.5e-183 644.0 349 87.4
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.7e-182 642.9 344 89.2
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.9e-182 642.1 353 86.4
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.9e-182 642.1 348 86.8
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 3.7e-182 641.7 346 87.6
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 4.9e-182 641.3 347 87.9
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.9e-182 641.3 351 86.6
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 6.4e-182 641.0 348 87.4
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 1.1e-181 640.2 353 86.4
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 2.4e-181 639.0 348 87.1
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 3.2e-181 638.6 347 87.3
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.1e-181 638.3 346 86.4
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 4.1e-181 638.3 348 86.2
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 5.4e-181 637.9 351 86.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 5.4e-181 637.9 357 85.7
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 7.0e-181 637.5 344 87.8
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 9.2e-181 637.1 385 82.1
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.2e-180 636.7 356 86.0
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.6e-180 636.3 354 87.0
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.1e-180 636.0 346 86.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.1e-180 636.0 351 85.8
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.1e-180 636.0 352 85.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.1e-180 636.0 346 87.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.7e-180 635.6 347 86.5
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 3.5e-180 635.2 345 87.5
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 3.5e-180 635.2 346 87.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 4.6e-180 634.8 348 86.2
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.6e-180 634.8 348 87.4
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 4.6e-180 634.8 351 86.9
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 7.8e-180 634.0 353 86.1
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 7.8e-180 634.0 353 86.1
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.0e-179 633.6 347 86.5
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.3e-179 633.3 347 86.5
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.3e-179 633.3 352 86.1
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 2.3e-179 632.5 354 84.7
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 3.0e-179 632.1 347 86.5
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 3.0e-179 632.1 345 86.7
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.9e-179 631.7 347 85.6
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 3.9e-179 631.7 346 87.3
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.9e-179 631.7 346 87.3
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.9e-179 631.7 346 87.3
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 5.1e-179 631.3 351 86.0
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 5.1e-179 631.3 414 76.8
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 6.6e-179 630.9 347 86.2
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 6.6e-179 630.9 347 85.6
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 6.6e-179 630.9 347 86.2
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 6.6e-179 630.9 349 86.2
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 6.6e-179 630.9 346 86.4
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 8.6e-179 630.6 353 84.7
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.1e-178 630.2 358 83.2
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-178 630.2 346 87.0
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.9e-178 629.4 347 85.6
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.9e-178 629.4 347 85.3
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.9e-178 629.4 347 85.3
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.9e-178 629.4 351 84.9
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.3e-178 628.6 360 85.0
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.3e-178 628.6 346 86.7
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 4.3e-178 628.2 346 86.7
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 7.3e-178 627.5 354 83.3
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 7.3e-178 627.5 354 83.6
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 9.5e-178 627.1 359 83.6
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 9.5e-178 627.1 346 86.1
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 9.5e-178 627.1 351 85.2
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.6e-177 626.3 357 83.8
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 2.1e-177 625.9 357 84.3
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 6.2e-177 624.4 347 85.3
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 6.2e-177 624.4 347 85.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 8.1e-177 624.0 344 85.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 8.1e-177 624.0 348 85.3
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.4e-176 623.2 347 86.2
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.4e-176 623.2 388 78.1
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.4e-176 623.2 358 81.6
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.3e-176 622.5 353 84.1
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 3.1e-176 622.1 358 83.0
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 5.2e-176 621.3 345 84.9
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 5.2e-176 621.3 406 74.9
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 6.8e-176 620.9 348 83.3
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 2.6e-175 619.0 349 85.4
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.4e-175 618.6 348 84.2
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.4e-175 618.2 348 84.5
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.7e-174 615.1 355 82.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.1e-173 613.6 356 81.7
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.4e-173 612.5 336 88.1
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 7.1e-173 610.9 308 91.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 9.2e-173 610.5 348 82.8
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.3e-171 606.7 351 82.9
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 3.1e-168 595.5 361 79.8
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.0e-168 595.1 302 91.1
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.0e-167 592.8 359 80.5
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.4e-167 591.7 310 88.7
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.7e-166 589.7 321 88.5
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.9e-166 589.0 356 78.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 3.2e-165 585.5 321 86.9
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.1e-164 582.8 358 81.6
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-163 580.1 324 84.9
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 3.0e-163 578.9 324 84.9
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.9e-162 576.2 325 83.7
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.4e-160 570.1 503 59.8
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.6e-159 565.8 551 55.4
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.6e-159 565.8 353 77.6
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 7.6e-159 564.3 509 59.3
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.9e-159 563.9 325 82.5
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.9e-158 562.4 352 77.6
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.4e-157 560.1 348 77.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.1e-154 550.4 344 78.8
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.6e-153 545.4 350 72.3
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.1e-153 544.3 358 70.9
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.4e-152 542.7 360 71.1
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.2e-148 530.4 348 71.3
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 2.3e-147 526.2 303 79.2
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 4.8e-137 491.9 243 90.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.3e-130 469.2 293 76.1
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 5.7e-130 468.4 344 65.7
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.9e-128 461.5 355 67.9
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.2e-125 452.2 308 67.2
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 4.6e-124 448.7 357 61.3
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.3e-114 416.0 250 80.4
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.5e-109 399.8 257 77.0
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.7e-105 386.0 354 54.5
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.8e-104 383.6 212 84.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 9.1e-104 381.3 218 83.0
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 3.8e-102 375.9 344 55.5
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.6e-95 354.0 222 77.5
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 1.4e-88 330.9 288 53.8
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.9e-87 325.5 212 73.6
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.4e-82 309.3 193 78.8
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 5.0e-70 269.2 310 45.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.6e-68 264.2 320 42.8
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.6e-68 264.2 325 44.0
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 4.7e-68 262.7 127 94.5
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.1e-67 260.0 331 43.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.0e-66 257.3 343 40.5
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 9.5e-61 238.4 312 41.0
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.3e-57 228.0 179 66.5
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 7.8e-55 218.8 327 39.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 8.1e-52 208.8 247 42.9
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.4e-50 203.0 114 88.6
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 6.0e-47 192.6 155 63.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 2.7e-31 140.6 92 76.1
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.5e-24 117.5 55 90.9
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.2e-23 115.2 157 45.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 4.3e-21 106.7 62 83.9
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 9.0e-19 99.0 93 60.2
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 1.2e-15 88.6 49 81.6
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 4.6e-15 86.7 73 65.8
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.3e-13 80.5 123 46.3
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 2.8e-12 77.4 34 91.2
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.3e-09 68.6 32 84.4
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 1.2e-07 62.0 31 83.9


User provided reference genes

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