Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.6e-310 1067.4 537 100.0
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.2e-265 919.5 543 88.2
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 5.7e-223 777.7 541 75.4
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 3.4e-199 698.7 541 68.6
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 7.3e-194 681.0 545 67.5
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.2e-193 680.2 552 65.9
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.6e-193 679.9 545 67.5
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.1e-193 679.5 522 69.3
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.1e-192 677.2 555 65.8
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 4.0e-192 675.2 554 65.3
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 2.0e-191 672.9 543 66.1
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 3.4e-191 672.2 546 66.3
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 3.4e-191 672.2 543 66.1
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 7.6e-191 671.0 546 65.9
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 3.8e-190 668.7 554 65.0
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.9e-189 666.4 543 65.7
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 1.2e-188 663.7 542 65.3
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 3.0e-187 659.1 542 65.7
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 5.1e-187 658.3 552 65.0
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 5.1e-187 658.3 542 64.6
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 6.6e-187 657.9 540 65.6
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 8.7e-187 657.5 554 64.3
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.1e-186 657.1 547 65.1
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 3.3e-186 655.6 518 68.0
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 7.3e-186 654.4 544 65.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 3.6e-185 652.1 546 65.4
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.4e-184 650.2 559 63.5
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.4e-184 650.2 546 63.4
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.8e-184 649.8 525 65.0
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 2.0e-183 646.4 538 63.4
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.7e-182 643.3 552 64.3
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.7e-182 643.3 516 67.4
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 2.1e-180 636.3 546 63.6
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.7e-179 633.3 533 65.1
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.1e-178 630.6 543 62.6
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.1e-178 630.6 537 64.8
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 3.3e-178 629.0 538 62.8
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 5.6e-178 628.2 556 62.8
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 9.6e-178 627.5 543 63.0
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 4.0e-176 622.1 532 62.4
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 4.5e-175 618.6 454 69.8
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.3e-174 617.1 538 61.2
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.7e-174 616.7 537 63.7
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 1.7e-174 616.7 539 62.3
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.9e-174 615.9 528 63.6
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 2.9e-174 615.9 555 60.4
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 1.1e-173 614.0 539 62.3
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.4e-173 613.6 539 61.4
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 2.4e-173 612.8 554 60.8
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 9.3e-173 610.9 528 63.4
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.1e-172 609.8 522 63.8
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.0e-172 608.2 528 62.9
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.0e-171 607.4 507 62.9
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 1.0e-171 607.4 539 61.6
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 3.9e-171 605.5 542 60.3
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 6.7e-171 604.7 541 59.7
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 8.7e-171 604.4 528 62.7
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 4.3e-170 602.1 546 60.1
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.3e-169 600.5 487 66.9
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.3e-169 600.5 575 59.1
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 6.2e-169 598.2 550 59.5
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 6.2e-169 598.2 530 61.1
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 3.1e-168 595.9 539 60.7
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.5e-167 593.6 543 61.3
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.0e-167 593.2 552 59.4
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 2.0e-167 593.2 534 61.0
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 4.5e-167 592.0 513 62.6
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 4.5e-167 592.0 552 59.2
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 7.6e-167 591.3 555 58.4
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.0e-166 590.9 441 69.4
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 4.9e-166 588.6 549 59.2
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 6.5e-166 588.2 538 59.7
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 6.5e-166 588.2 484 64.3
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.1e-165 587.4 483 64.2
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.1e-165 587.4 539 60.5
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.5e-165 586.3 545 59.1
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 5.5e-165 585.1 550 58.5
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 8.7e-163 577.8 457 66.5
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 9.6e-162 574.3 420 71.2
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 6.9e-160 568.2 543 58.6
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 4.5e-159 565.5 530 57.0
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.7e-158 563.5 493 60.9
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.5e-157 558.5 592 54.6
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.5e-151 540.4 537 57.4
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 4.5e-151 538.9 487 60.0
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 1.3e-150 537.3 552 55.6
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 8.5e-150 534.6 548 55.7
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 3.2e-149 532.7 494 58.7
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 5.5e-149 531.9 590 51.5
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 5.5e-149 531.9 431 67.1
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 7.4e-146 521.5 544 56.1
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.9e-144 515.0 465 59.6
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 2.0e-135 486.9 441 57.6
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.5e-133 479.9 521 51.8
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 6.7e-131 471.9 368 67.4
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 3.3e-130 469.5 493 54.4
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.3e-130 469.5 538 50.2
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 1.7e-129 467.2 409 57.0
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.4e-128 463.4 496 52.4
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 1.7e-126 457.2 351 65.5
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.3e-113 414.5 411 53.0
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 8.3e-113 411.8 385 56.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 5.0e-110 402.5 318 66.7
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 7.5e-106 388.7 446 51.1
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.1e-101 374.8 452 46.7
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 5.6e-101 372.5 486 46.3
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 7.3e-101 372.1 352 60.2
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.5e-98 364.4 475 44.0
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 2.0e-98 364.0 504 43.5
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.0e-95 352.4 439 46.9
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.5e-93 347.1 290 62.8
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 2.1e-87 327.4 432 43.1
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 1.7e-81 307.8 515 39.2
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.8e-76 290.4 377 46.7
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.9e-75 285.8 265 59.6
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 4.6e-63 246.5 404 38.6
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.9e-62 243.4 299 48.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 2.0e-58 231.1 542 32.1
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 2.7e-47 194.1 482 28.8
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 3.4e-34 150.6 121 66.1
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 8.5e-33 146.0 179 50.3
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.0e-30 139.0 110 64.5
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 9.7e-29 132.5 236 40.7
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.2e-23 115.5 103 57.3
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.6e-23 115.2 180 40.0
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 3.1e-19 100.9 160 46.2
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.1e-19 100.5 203 35.5
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 1.5e-16 92.0 134 48.5
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.9e-16 91.7 89 51.7
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 6.1e-15 86.7 67 59.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.4e-14 85.5 95 47.4
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 6.7e-14 83.2 62 71.0
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.1e-11 74.3 160 42.5
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 2.7e-10 71.2 54 63.0


User provided reference genes

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