Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.7e-45 183.7 83 100.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-38 162.5 104 76.9
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.3e-38 161.8 104 76.9
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.1e-38 160.6 104 76.0
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.7e-37 157.1 104 75.0
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.7e-37 157.1 104 74.0
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 8.5e-33 143.3 104 68.3
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.9e-30 134.4 104 64.4
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.0e-29 132.1 104 64.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.6e-29 131.7 104 63.5
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 9.1e-27 123.2 106 59.4
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.9e-24 115.5 104 57.7
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.2e-24 114.4 104 59.6
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 7.2e-24 113.6 99 58.6
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.0e-22 109.8 104 51.9
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.4e-22 109.4 104 56.7
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.2e-22 107.5 103 56.3
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.2e-22 107.5 104 52.9
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 6.7e-22 107.1 103 51.5
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 6.7e-22 107.1 103 51.5
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 6.7e-22 107.1 105 57.1
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 8.8e-22 106.7 104 52.9
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.8e-22 106.7 104 53.8
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.1e-21 106.3 104 52.9
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-21 106.3 104 53.8
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.0e-21 105.5 104 54.8
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 4.4e-21 104.4 105 56.2
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 9.7e-21 103.2 104 49.0
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 9.7e-21 103.2 105 55.2
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.3e-20 102.8 104 51.9
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.3e-20 102.8 106 56.6
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.2e-20 102.1 104 51.0
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.2e-20 102.1 104 53.8
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.2e-20 102.1 104 54.8
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 6.3e-20 100.5 104 50.0
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 7.0e-19 97.1 104 51.0
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 9.1e-19 96.7 104 51.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.6e-18 95.9 104 51.9
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.7e-18 95.1 105 48.6
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 2.7e-18 95.1 59 74.6
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 4.5e-18 94.4 104 48.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 7.7e-18 93.6 104 46.2
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 7.7e-18 93.6 104 50.0
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.0e-17 93.2 104 48.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.7e-17 92.4 104 49.0
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 2.2e-17 92.0 105 49.5
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 2.2e-17 92.0 104 44.2
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 6.5e-17 90.5 105 48.6
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 6.5e-17 90.5 104 48.1
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.5e-16 89.4 109 47.7
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.9e-16 89.0 104 47.1
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.9e-16 89.0 104 47.1
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.9e-16 89.0 104 47.1
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 2.5e-16 88.6 104 42.3
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 3.2e-16 88.2 104 47.1
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.2e-16 87.8 104 46.2
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.5e-16 87.4 104 46.2
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 9.4e-16 86.7 104 42.3
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.6e-15 85.9 99 49.5
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.6e-15 85.9 104 47.1
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.1e-15 85.5 104 51.0
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 2.1e-15 85.5 109 45.0
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.6e-15 84.7 107 45.8
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 4.7e-15 84.3 105 46.7
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.8e-14 82.4 104 45.2
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 3.0e-14 81.6 105 42.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.0e-14 81.6 105 40.0
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 4.0e-14 81.3 104 42.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 6.8e-14 80.5 104 44.2
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.0e-13 79.0 104 46.2
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 2.6e-13 78.6 110 43.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 4.4e-13 77.8 106 43.4
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 4.4e-13 77.8 104 46.2
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 2.2e-12 75.5 90 44.4
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 2.2e-12 75.5 105 42.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.8e-12 75.1 105 40.0
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.4e-11 72.0 104 46.2
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 5.4e-11 70.9 103 40.8
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 5.4e-11 70.9 90 45.6
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 7.0e-11 70.5 105 41.9
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 7.0e-11 70.5 106 39.6
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.2e-10 69.7 111 38.7
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.6e-10 69.3 111 39.6
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 2.0e-10 68.9 93 41.9
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 2.7e-10 68.6 111 38.7
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 2.7e-10 68.6 111 38.7
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 3.5e-10 68.2 111 38.7
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.5e-10 67.8 111 37.8
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 5.9e-10 67.4 111 37.8
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-09 66.6 111 37.8
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.0e-09 66.6 111 37.8
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.0e-09 66.6 96 41.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-09 66.2 109 37.6
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.3e-09 66.2 110 37.3
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.7e-09 65.9 106 42.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.7e-09 65.9 106 42.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.7e-09 65.9 106 42.5
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 2.2e-09 65.5 111 38.7
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 2.9e-09 65.1 104 38.5
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.9e-09 65.1 104 40.4
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 5.0e-09 64.3 102 38.2
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 6.5e-09 63.9 110 36.4
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 8.5e-09 63.5 107 35.5
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.1e-08 63.2 111 35.1
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.9e-08 62.4 92 41.3
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.5e-08 62.0 104 37.5
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.5e-08 62.0 104 37.5
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 3.2e-08 61.6 104 34.6
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 4.2e-08 61.2 102 33.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.5e-08 60.8 107 35.5
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 5.5e-08 60.8 106 40.6
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 5.5e-08 60.8 111 34.2
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 7.2e-08 60.5 104 35.6
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 9.4e-08 60.1 109 33.9
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 9.4e-08 60.1 100 38.0
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.2e-07 59.7 107 34.6
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.1e-07 58.9 92 41.3
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.1e-07 58.9 87 40.2
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.6e-07 58.2 111 35.1
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 4.7e-07 57.8 102 32.4
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 6.1e-07 57.4 98 39.8
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 1.0e-06 56.6 102 31.4
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-06 56.6 102 31.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-06 56.6 102 31.4
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 2.3e-06 55.5 87 37.9
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.3e-06 55.5 104 35.6
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 2.3e-06 55.5 102 33.3
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 3.0e-06 55.1 105 31.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 5.2e-06 54.3 110 31.8


User provided reference genes

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