Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003504 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D043365 1.4e-70 269.6 146 100.0
Actinidia03921 Actinidia chinensis HOM05D002168 ORTHO05D002277 6.7e-41 171.0 141 70.9
Rhsim03G0049500 Rhododendron simsii HOM05D002168 ORTHO05D002277 3.3e-40 168.7 141 70.9
vmacro07652 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 4.8e-39 164.9 146 67.8
Cfa017714 Carpinus fangiana HOM05D002168 ORTHO05D002277 9.1e-30 134.0 141 55.3
Haze_20409 Corylus avellana HOM05D002168 ORTHO05D002277 1.1e-24 117.1 147 50.3
Dinv13788 Davidia involucrata HOM05D002168 ORTHO05D002277 3.7e-23 112.1 99 66.7
QL07p017571 Quercus lobata HOM05D002168 ORTHO05D002277 3.7e-23 112.1 142 50.7
TAR633G2049 Trochodendron aralioides HOM05D002168 ORTHO05D002277 9.1e-22 107.5 145 49.7
Nn2g14555 Nelumbo nucifera HOM05D002168 ORTHO05D002277 3.4e-21 105.5 143 51.7
MBI11_g10545_MAGBIO Magnolia biondii HOM05D002168 ORTHO05D002277 8.5e-20 100.9 147 47.6
Manes.08G153100 Manihot esculenta HOM05D002168 ORTHO05D002277 1.1e-19 100.5 141 47.5
Prupe.7G014600 Prunus persica HOM05D002168 ORTHO05D002277 8.0e-18 94.4 141 46.1
GSVIVG01029958001 Vitis vinifera HOM05D002168 ORTHO05D002277 2.3e-17 92.8 129 51.2
arahy.Tifrunner.gnm1.ann1.B3FMDE Arachis hypogaea HOM05D002168 ORTHO05D002277 3.9e-17 92.0 136 42.6
Dinv25043 Davidia involucrata HOM05D002168 ORTHO05D002277 6.7e-17 91.3 70 71.4
CiPaw.09G166700 Carya illinoinensis HOM05D002168 ORTHO05D002277 1.5e-16 90.1 142 45.8
Peaxi162Scf01421g00011 Petunia axillaris HOM05D002168 ORTHO05D002277 2.0e-16 89.7 138 45.7
Eucgr.A02140 Eucalyptus grandis HOM05D002168 ORTHO05D002277 3.3e-16 89.0 141 45.4
Nitab4.5_0000098g0270 Nicotiana tabacum HOM05D002168 ORTHO05D002277 9.7e-16 87.4 139 44.6
Glyma.19G116700 Glycine max HOM05D002168 ORTHO05D002277 1.1e-14 84.0 137 44.5
Phvul.001G105633 Phaseolus vulgaris HOM05D002168 ORTHO05D002277 1.8e-14 83.2 138 43.5
arahy.Tifrunner.gnm1.ann1.V0KP8I Arachis hypogaea HOM05D002168 ORTHO05D002277 2.4e-14 82.8 131 40.5
Sabra19G0050400 Salix brachista HOM05D002168 ORTHO05D002277 2.4e-14 82.8 142 42.3
Nitab4.5_0005671g0050 Nicotiana tabacum HOM05D002168 ORTHO05D043365 5.3e-14 81.6 139 41.7
MD12G1011400 Malus domestica HOM05D002168 ORTHO05D002277 2.0e-13 79.7 141 40.4
MD14G1008000 Malus domestica HOM05D002168 ORTHO05D002277 2.6e-13 79.3 141 42.6
TWI32G0897 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 5.9e-13 78.2 141 39.0
Sabra13G0057400 Salix brachista HOM05D002168 ORTHO05D002277 1.7e-12 76.6 142 40.1
Oeu044206.2 Olea europaea HOM05D002168 ORTHO05D002277 2.2e-12 76.3 141 41.1
Duzib177G0738 Durio zibethinus HOM05D002168 ORTHO05D002277 5.0e-12 75.1 132 45.5
Thecc.05G242400 Theobroma cacao HOM05D002168 ORTHO05D002277 6.5e-12 74.7 132 45.5
COL.COLO4_28638 Corchorus olitorius HOM05D002168 ORTHO05D002277 8.5e-12 74.3 132 44.7
Potri.019G040100 Populus trichocarpa HOM05D002168 ORTHO05D002277 1.9e-11 73.2 142 43.0
Atru.chr2.1515 Acer truncatum HOM05D002168 ORTHO05D002277 5.5e-11 71.6 143 39.9
Ca_08312_v3 Cicer arietinum L. HOM05D002168 ORTHO05D002277 7.2e-11 71.2 137 37.2
THA.LOC104802884 Tarenaya hassleriana HOM05D002168 ORTHO05D002277 1.2e-10 70.5 143 39.9
Lalb_Chr14g0364831 Lupinus albus HOM05D002168 ORTHO05D002277 3.6e-10 68.9 137 38.7
Actinidia37819 Actinidia chinensis HOM05D002168 ORTHO05D002277 6.1e-10 68.2 63 63.5
Potri.013G065700 Populus trichocarpa HOM05D002168 ORTHO05D002277 8.0e-10 67.8 142 40.1
Gohir.A11G229100 Gossypium hirsutum HOM05D002168 ORTHO05D002277 3.0e-09 65.9 133 42.9
RcHm_v2.0_Chr3g0496111 Rosa chinensis HOM05D002168 ORTHO05D002277 6.7e-09 64.7 142 39.4
Sopen08g019820 Solanum pennellii HOM05D002168 ORTHO05D002277 1.5e-08 63.5 57 63.2
Lj1A1072T24 Lonicera japonica HOM05D002168 ORTHO05D002277 2.0e-08 63.2 140 44.3
TPR.G34788 Trifolium pratense HOM05D002168 ORTHO05D002277 3.3e-08 62.4 137 35.0
FAN26G0197 Fragaria x ananassa HOM05D002168 ORTHO05D002277 5.7e-08 61.6 141 37.6
Solyc08g066140.3 Solanum lycopersicum HOM05D002168 ORTHO05D002277 5.7e-08 61.6 57 61.4
SGA_v2.0_scaffold69G23217 Striga asiatica HOM05D002168 ORTHO05D002277 5.7e-08 61.6 143 39.2
PGR042G1483 Punica granatum HOM05D002168 ORTHO05D002277 7.5e-08 61.2 140 35.0
CAN.G9.1 Capsicum annuum HOM05D002168 ORTHO05D002277 9.7e-08 60.8 58 60.3
Gohir.D11G241200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 9.7e-08 60.8 132 40.9
Gorai.007G255300 Gossypium raimondii HOM05D002168 ORTHO05D002277 9.7e-08 60.8 132 40.9
FAN28G1730 Fragaria x ananassa HOM05D002168 ORTHO05D002277 1.3e-07 60.5 141 37.6
VMungo1383G0989 Vigna mungo HOM05D002168 ORTHO05D002277 1.7e-07 60.1 137 35.0
Psat0s2078g0040 Pisum sativum HOM05D002168 ORTHO05D002277 2.2e-07 59.7 136 35.3
DCAR_016962 Daucus carota HOM05D002168 ORTHO05D002277 2.8e-07 59.3 140 35.0
PGSC0003DMG401007628 Solanum tuberosum HOM05D002168 ORTHO05D002277 4.8e-07 58.5 57 57.9
AUR62018085 Chenopodium quinoa HOM05D002168 ORTHO05D002277 6.3e-07 58.2 141 36.9
Medtr7g086640 Medicago truncatula HOM05D002168 ORTHO05D002277 8.2e-07 57.8 126 35.7
Lj1g0016812 Lotus japonicus HOM05D002168 ORTHO05D002277 1.4e-06 57.0 136 37.5
AUR62032008 Chenopodium quinoa HOM05D002168 ORTHO05D002277 5.3e-06 55.1 141 36.9
Cc06_g21470 Coffea canephora HOM05D002168 ORTHO05D002277 7.0e-06 54.7 139 36.0
Aqoxy1G00512 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 9.1e-06 54.3 131 35.9
EL10Ac3g06617 Beta vulgaris HOM05D002168 ORTHO05D002277 9.1e-06 54.3 128 37.5


User provided reference genes

Program Settings