Gene: Solyc08g066140.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc08g066140.3
- Transcript Identifier Solyc08g066140.3.1
- Gene Type Coding gene
- Location SL4.0ch08 : 52652418-52653379 : positive
Gene Family Information
- ID HOM05D002168
- #Genes/#Species 309/100
- Phylogenetic origin
- ID ORTHO05D002277
- #Genes/#Species 301/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc08g066140.3.1
- gene_id Solyc08g066140
Descriptions
- Description Polyribonucleotide nucleotidyltransferase (AHRD V3.3 *-* A0A2U1LJN3_ARTAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006402 | IEA | InterPro | mRNA catabolic process | |
| GO:0006396 | ISO | PLAZA Homology (enrichment) | RNA processing | HOM05D002168 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0004654 | IEA | InterPro | polyribonucleotide nucleotidyltransferase activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027408 | PNPase/RNase PH domain superfamily |
| IPR012162 | Polyribonucleotide nucleotidyltransferase |
| IPR003029 | S1 domain |
| IPR036612 | K Homology domain, type 1 superfamily |
| IPR004088 | K Homology domain, type 1 |
| IPR004087 | K Homology domain |
| IPR036345 | Exoribonuclease, PH domain 2 superfamily |
| IPR022967 | RNA-binding domain, S1 |
| IPR012340 | Nucleic acid-binding, OB-fold |
| Mapman id | Description |
|---|---|
| 16.11.1.1 | RNA processing.organelle machinery.ribonuclease activities.polynucleotide phosphorylase (PNP) |