Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.1e-44 181.4 91 100.0
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-40 167.9 91 94.5
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-40 167.9 91 94.5
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.1e-39 164.1 91 93.4
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-36 156.4 91 91.2
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.0e-36 154.5 91 89.0
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.3e-36 154.1 101 82.2
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.0e-36 153.3 91 90.1
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.6e-27 125.2 109 58.7
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-25 118.2 97 69.1
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.1e-24 115.5 110 54.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.0e-23 113.2 115 55.7
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.1e-23 110.9 101 54.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 5.1e-23 110.9 108 50.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-22 109.8 108 51.9
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.5e-22 109.4 108 50.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.5e-22 109.4 115 54.8
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 7.4e-22 107.1 97 57.7
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-21 105.9 96 56.2
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.6e-21 105.9 106 51.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.8e-20 102.4 94 54.3
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 3.1e-20 101.7 108 45.4
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.1e-20 101.7 110 49.1
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.1e-20 101.3 106 52.8
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 5.3e-20 100.9 107 47.7
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 5.3e-20 100.9 100 51.0
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.9e-20 100.5 99 53.5
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.2e-19 99.8 108 48.1
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 2.0e-19 99.0 106 50.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.0e-19 99.0 101 51.5
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 3.4e-19 98.2 104 49.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.5e-19 97.8 100 49.0
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 7.6e-19 97.1 96 52.1
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.0e-18 96.7 101 51.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.0e-18 96.7 100 49.0
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.0e-18 96.7 103 55.3
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.7e-18 95.9 101 48.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.2e-18 95.5 95 49.5
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 5.0e-18 94.4 99 47.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 6.5e-18 94.0 101 47.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 8.5e-18 93.6 111 47.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 8.5e-18 93.6 101 51.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 8.5e-18 93.6 113 43.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.1e-17 93.2 108 44.4
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.1e-17 93.2 108 45.4
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.4e-17 92.8 95 51.6
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.5e-17 92.0 106 46.2
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.5e-17 92.0 95 48.4
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 4.2e-17 91.3 95 48.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.2e-17 91.3 95 50.5
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.2e-17 91.3 97 48.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 4.2e-17 91.3 106 47.2
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.2e-17 91.3 92 47.8
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 5.5e-17 90.9 96 47.9
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 7.2e-17 90.5 94 48.9
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 7.2e-17 90.5 95 48.4
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 7.2e-17 90.5 96 47.9
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 9.3e-17 90.1 92 50.0
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 9.3e-17 90.1 94 48.9
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.2e-16 89.7 96 46.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.2e-16 89.7 92 50.0
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.6e-16 89.4 106 45.3
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.6e-16 89.4 104 48.1
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.1e-16 89.0 102 50.0
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 6.1e-16 87.4 94 46.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.8e-15 85.9 96 43.8
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.3e-15 85.5 103 42.7
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.3e-15 85.5 104 40.4
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.9e-15 84.7 95 47.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 5.1e-15 84.3 96 45.8
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.8e-15 83.6 95 47.4
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.1e-14 83.2 87 47.1
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.5e-14 82.8 103 39.8
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.5e-14 82.8 112 43.8
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.9e-14 82.4 104 40.4
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.9e-14 82.4 97 42.3
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.9e-14 82.4 95 46.3
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.9e-14 82.4 95 46.3
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.9e-14 82.4 105 43.8
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.3e-14 81.6 95 46.3
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.3e-14 81.3 105 41.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.3e-14 81.3 95 44.2
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.7e-14 80.9 96 45.8
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 5.7e-14 80.9 87 46.0
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 5.7e-14 80.9 90 48.9
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 7.4e-14 80.5 96 40.6
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.3e-13 79.7 94 46.8
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.7e-13 79.3 91 44.0
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.7e-13 78.2 99 41.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.7e-13 78.2 105 43.8
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.7e-13 78.2 105 41.9
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 4.8e-13 77.8 97 41.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 4.8e-13 77.8 99 39.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.8e-13 77.8 95 45.3
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.8e-13 77.8 92 42.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.3e-13 77.4 93 40.9
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 8.2e-13 77.0 99 42.4
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 8.2e-13 77.0 97 40.2
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 8.2e-13 77.0 97 40.2
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 8.2e-13 77.0 87 44.8
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.1e-12 76.6 101 43.6
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.4e-12 76.3 94 40.4
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-12 76.3 104 43.3
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.1e-12 75.1 99 42.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 3.1e-12 75.1 96 44.8
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.1e-12 75.1 107 38.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 4.1e-12 74.7 95 40.0
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.2e-11 73.2 108 37.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.5e-11 72.8 95 38.9
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.6e-11 72.0 97 38.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.6e-11 72.0 97 38.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.6e-11 72.0 97 38.1
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 4.5e-11 71.2 99 39.4
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 5.9e-11 70.9 93 41.9
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 7.7e-11 70.5 61 57.4
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.0e-10 70.1 101 43.6
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.7e-10 69.3 54 57.4
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.7e-10 69.3 94 38.3
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 5.0e-10 67.8 97 41.2
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.0e-10 67.8 101 43.6
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 8.5e-10 67.0 85 37.6
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.5e-09 65.5 92 38.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 4.2e-09 64.7 100 40.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.1e-08 62.4 100 43.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 3.6e-08 61.6 95 35.8
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.6e-08 61.6 84 36.9
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 6.1e-08 60.8 75 45.3
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.5e-06 56.2 33 75.8
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 7.4e-06 53.9 91 38.5


User provided reference genes

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