Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.0e-99 364.4 177 100.0
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.8e-87 323.6 208 80.8
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.8e-79 297.0 158 91.8
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.8e-79 297.0 158 91.8
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 2.0e-76 289.3 158 88.0
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.7e-76 288.9 197 77.2
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 1.7e-75 286.2 158 87.3
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 6.6e-75 284.3 145 92.4
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.9e-74 282.7 158 85.4
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.9e-74 282.7 145 92.4
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 3.3e-74 282.0 158 85.4
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 4.3e-74 281.6 158 86.1
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 5.6e-74 281.2 158 85.4
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 5.6e-74 281.2 144 92.4
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 2.1e-73 279.3 158 84.2
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 2.1e-73 279.3 158 84.8
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 4.7e-73 278.1 158 84.2
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 4.7e-73 278.1 158 82.9
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 4.7e-73 278.1 158 84.2
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 6.1e-73 277.7 155 85.8
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.4e-72 276.6 144 91.0
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 1.4e-72 276.6 160 83.1
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.8e-72 276.2 158 83.5
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 2.3e-72 275.8 144 90.3
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 2.3e-72 275.8 158 83.5
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 3.1e-72 275.4 144 90.3
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 3.1e-72 275.4 158 83.5
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.1e-72 275.4 158 83.5
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 3.1e-72 275.4 158 84.2
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 3.1e-72 275.4 147 86.4
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 4.0e-72 275.0 145 87.6
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 4.0e-72 275.0 158 81.6
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 4.0e-72 275.0 158 82.9
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 5.2e-72 274.6 144 88.9
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 5.2e-72 274.6 144 88.9
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 5.2e-72 274.6 144 88.9
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.2e-72 274.6 158 81.6
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 8.9e-72 273.9 145 89.0
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 1.2e-71 273.5 144 88.2
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 1.2e-71 273.5 144 88.2
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 1.5e-71 273.1 158 81.6
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 1.5e-71 273.1 144 87.5
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 1.5e-71 273.1 158 82.3
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 2.0e-71 272.7 158 81.0
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 2.0e-71 272.7 158 81.0
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 2.0e-71 272.7 158 82.3
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 2.6e-71 272.3 144 89.6
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 2.6e-71 272.3 158 81.0
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.6e-71 272.3 144 87.5
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 3.4e-71 271.9 144 86.8
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.4e-71 271.9 158 82.3
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 3.4e-71 271.9 158 82.3
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 3.4e-71 271.9 158 82.9
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 5.8e-71 271.2 144 86.1
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 5.8e-71 271.2 144 86.1
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 5.8e-71 271.2 144 86.8
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 5.8e-71 271.2 144 86.8
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 5.8e-71 271.2 144 86.8
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 5.8e-71 271.2 144 87.5
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 7.5e-71 270.8 144 87.5
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 7.5e-71 270.8 158 81.0
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 7.5e-71 270.8 144 87.5
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 9.8e-71 270.4 158 79.7
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 9.8e-71 270.4 144 88.2
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 9.8e-71 270.4 144 88.2
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 1.3e-70 270.0 144 86.1
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 1.7e-70 269.6 158 81.6
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 1.7e-70 269.6 144 86.1
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.7e-70 269.6 147 85.7
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 2.2e-70 269.2 156 82.1
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 2.2e-70 269.2 145 86.9
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.2e-70 269.2 144 86.1
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.9e-70 268.9 158 80.4
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 2.9e-70 268.9 158 80.4
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 2.9e-70 268.9 158 80.4
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 2.9e-70 268.9 159 81.1
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 4.9e-70 268.1 144 86.1
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 4.9e-70 268.1 158 79.7
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 4.9e-70 268.1 158 79.7
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 6.4e-70 267.7 158 79.7
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 8.3e-70 267.3 158 79.7
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 8.3e-70 267.3 156 81.4
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.4e-69 266.5 158 81.6
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.4e-69 266.5 158 78.5
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 1.4e-69 266.5 158 79.7
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 1.9e-69 266.2 144 84.7
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 1.9e-69 266.2 160 80.0
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 1.9e-69 266.2 158 79.7
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.9e-69 266.2 144 86.8
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 3.2e-69 265.4 147 84.4
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.2e-69 265.4 144 86.8
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 4.1e-69 265.0 158 80.4
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 5.4e-69 264.6 144 86.8
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 5.4e-69 264.6 146 85.6
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 7.0e-69 264.2 158 79.1
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 7.0e-69 264.2 158 81.0
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 7.0e-69 264.2 158 78.5
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 9.2e-69 263.8 158 78.5
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 9.2e-69 263.8 144 85.4
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 9.2e-69 263.8 144 85.4
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 9.2e-69 263.8 144 85.4
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 9.2e-69 263.8 144 85.4
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 9.2e-69 263.8 144 85.4
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 9.2e-69 263.8 158 77.8
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 9.2e-69 263.8 158 77.8
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 1.2e-68 263.5 160 79.4
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 1.2e-68 263.5 144 86.1
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.2e-68 263.5 144 84.7
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.6e-68 263.1 158 77.8
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 1.6e-68 263.1 158 77.8
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 3.5e-68 261.9 147 82.3
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 3.5e-68 261.9 145 84.1
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 3.5e-68 261.9 158 79.7
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 4.6e-68 261.5 158 79.1
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 4.6e-68 261.5 144 85.4
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 6.0e-68 261.2 158 78.5
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 6.0e-68 261.2 158 78.5
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 6.0e-68 261.2 147 82.3
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 7.8e-68 260.8 144 83.3
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 7.8e-68 260.8 158 78.5
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 1.3e-67 260.0 158 77.8
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 1.3e-67 260.0 160 78.8
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 1.3e-67 260.0 158 77.8
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.3e-67 260.0 158 78.5
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 1.7e-67 259.6 159 77.4
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 1.7e-67 259.6 147 82.3
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 3.0e-67 258.8 145 84.8
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 3.9e-67 258.5 157 76.4
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 5.0e-67 258.1 157 77.7
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 6.6e-67 257.7 158 76.6
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 8.6e-67 257.3 158 75.9
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 1.5e-66 256.5 155 76.8
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.5e-66 256.5 158 75.9
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 1.9e-66 256.1 158 77.8
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 4.3e-66 255.0 158 75.9
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 9.5e-66 253.8 158 75.3
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 9.5e-66 253.8 144 83.3
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 2.1e-65 252.7 158 75.3
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 8.0e-65 250.8 158 74.1
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 8.0e-65 250.8 158 74.1
CSS0038211 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 3.4e-63 245.4 163 77.9
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.4e-61 240.0 159 71.7
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 4.1e-61 238.4 159 69.8
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 4.1e-61 238.4 141 79.4
CSS0016001 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.1e-60 236.1 175 72.0
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 6.0e-60 234.6 148 74.3
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 2.1e-57 226.1 147 72.1
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 1.4e-56 223.4 158 65.2
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 3.1e-56 222.2 159 66.0
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 8.9e-56 220.7 159 66.0
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 2.0e-55 219.5 159 64.8
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.4e-53 212.6 158 64.6
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.7e-52 209.1 158 63.9
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 2.9e-46 189.1 100 88.0
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 9.3e-45 184.1 114 76.3
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 5.1e-43 178.3 114 73.7
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 2.1e-41 172.9 144 61.8
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 2.6e-39 166.0 145 57.2
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 9.9e-39 164.1 90 83.3
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 5.4e-37 158.3 158 57.6
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 9.9e-31 137.5 143 50.3
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 2.9e-30 136.0 146 46.6
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 2.4e-29 132.9 142 47.9
CDE09G1104 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 4.0e-24 115.5 147 47.6
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 2.1e-20 103.2 92 55.4
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 6.0e-20 101.7 84 60.7
TPR.G40483 Trifolium pratense HOM05D003507 ORTHO05D004324 8.7e-19 97.8 46 95.7
Dinv22443 Davidia involucrata HOM05D003507 ORTHO05D182987 4.8e-17 92.0 65 76.9
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 1.2e-12 77.4 48 75.0
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.4e-08 63.2 48 64.6
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 2.6e-07 59.7 154 28.6


User provided reference genes

Program Settings