Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.6e-286 987.6 528 100.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 9.1e-189 664.1 525 67.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.2e-184 648.3 523 66.3
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.3e-176 622.9 527 61.9
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.4e-175 619.0 527 61.1
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.9e-158 562.8 528 62.7
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.2e-156 557.4 528 62.3
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-154 549.3 333 82.9
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 4.3e-154 548.9 526 55.3
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.9e-150 536.2 526 58.7
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.2e-149 532.7 523 59.3
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.7e-147 526.9 525 56.2
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.7e-147 526.9 526 54.6
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.6e-147 524.6 334 80.8
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.9e-144 514.6 324 81.8
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.6e-143 513.1 449 67.3
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 5.8e-143 511.9 525 50.5
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 7.1e-141 505.0 520 55.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 9.2e-141 504.6 525 56.6
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.0e-139 501.1 525 50.1
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.3e-139 500.0 525 57.0
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.5e-138 496.5 525 56.6
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 5.6e-138 495.4 525 51.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.6e-137 493.8 527 53.7
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.0e-135 486.9 523 51.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.6e-135 486.5 526 50.2
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.1e-132 476.9 525 51.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.1e-132 476.9 525 51.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.1e-132 476.9 521 48.9
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 4.6e-132 475.7 526 52.7
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 6.0e-132 475.3 525 53.3
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 3.3e-130 469.5 521 50.7
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.3e-130 468.4 524 50.2
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.1e-129 466.8 521 52.8
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.1e-129 464.9 520 54.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.1e-128 463.0 520 53.7
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 3.1e-128 463.0 525 52.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 5.3e-128 462.2 520 50.4
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.5e-127 460.7 529 51.4
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.6e-127 459.9 520 53.1
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 5.8e-127 458.8 520 46.5
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 9.9e-127 458.0 520 53.7
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.2e-126 456.8 522 53.4
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.9e-126 456.4 520 48.8
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.4e-125 453.4 527 52.4
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.2e-125 453.0 548 46.7
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.2e-125 453.0 520 52.3
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.2e-124 451.1 520 52.3
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.3e-121 441.0 521 48.6
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 5.3e-120 435.6 520 49.0
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 9.0e-120 434.9 524 50.8
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 9.9e-119 431.4 526 50.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.3e-118 431.0 525 50.3
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 2.2e-118 430.3 521 50.9
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 6.4e-118 428.7 553 49.2
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 6.4e-118 428.7 527 50.9
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 4.2e-117 426.0 524 45.6
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 9.3e-117 424.9 525 49.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 9.3e-117 424.9 525 48.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.6e-116 424.1 521 49.7
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 2.1e-116 423.7 542 45.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.1e-116 423.7 526 49.4
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.7e-116 423.3 520 48.1
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.5e-116 422.9 524 49.0
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.3e-115 421.0 527 43.8
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.5e-114 417.5 537 43.8
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 5.6e-114 415.6 523 47.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 8.1e-113 411.8 473 54.5
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 4.0e-112 409.5 527 49.1
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 6.9e-112 408.7 557 42.2
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.0e-112 408.3 525 45.3
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.5e-111 407.5 523 46.5
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.2e-110 403.7 527 50.5
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 8.4e-110 401.7 523 44.4
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.1e-109 401.4 523 44.6
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.6e-108 397.5 525 49.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.5e-108 396.4 529 51.2
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 7.4e-106 388.7 526 48.1
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 7.4e-106 388.7 513 48.1
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 2.8e-105 386.7 507 46.9
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.2e-100 371.3 545 39.8
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.3e-99 367.1 516 47.1
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.9e-99 366.3 524 46.0
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 6.7e-99 365.5 451 50.8
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.3e-98 363.2 450 46.9
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.2e-97 360.5 525 45.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 4.1e-96 356.3 524 46.8
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 6.9e-96 355.5 505 40.4
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.3e-94 351.3 525 44.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 2.2e-94 350.5 525 45.9
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.0e-94 349.4 339 52.5
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 4.2e-93 346.3 526 46.4
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 4.2e-93 346.3 524 41.4
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.2e-93 345.5 526 42.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.7e-92 343.6 521 44.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 3.6e-92 343.2 522 45.2
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 3.6e-92 343.2 528 44.5
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 6.1e-92 342.4 522 46.6
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 6.7e-91 339.0 522 45.8
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.1e-90 338.2 535 42.1
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-90 337.8 525 45.5
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 4.3e-90 336.3 318 64.2
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 9.7e-90 335.1 520 43.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 2.2e-89 334.0 528 44.1
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 5.3e-88 329.3 528 43.8
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.6e-87 327.0 527 43.3
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.9e-83 313.2 529 39.5
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 5.1e-83 312.8 529 42.0
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 4.1e-80 303.1 540 40.7
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 7.0e-80 302.4 533 40.3
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 2.9e-78 297.0 527 39.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.0e-75 288.5 523 38.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.4e-75 288.1 532 41.2
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.6e-74 283.9 530 38.3
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 7.0e-72 275.8 288 51.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.9e-69 267.7 394 43.9
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.1e-68 264.2 522 39.8
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 6.1e-68 262.7 334 44.6
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.7e-65 254.6 343 42.0
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.2e-62 244.2 473 42.3
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.1e-60 237.7 535 35.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.4e-59 235.0 530 34.5
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 6.8e-59 232.6 264 45.8
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.2e-53 213.4 254 59.8
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.9e-45 188.0 269 39.4
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 9.5e-45 185.7 275 51.6
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.8e-44 184.1 133 69.9
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 3.1e-43 180.6 201 51.2
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.0e-39 166.4 429 31.7
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 3.0e-38 164.1 535 31.6
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.2e-34 152.1 209 51.7
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.8e-34 149.8 136 71.3
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.5e-34 149.4 216 57.4
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.3e-29 132.9 96 71.9
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-26 124.4 96 69.8
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-26 124.4 96 69.8
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-25 121.7 96 69.8
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-25 119.4 97 69.1
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.4e-24 118.6 141 63.8
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 5.4e-24 116.7 91 59.3
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.1e-23 114.8 72 72.2
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-23 114.4 96 67.7
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-23 113.6 96 66.7
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.8e-23 112.8 96 66.7
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.6e-22 109.8 56 94.6
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-21 107.5 56 92.9
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-20 105.1 56 91.1
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-20 104.8 56 91.1
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-20 104.8 56 91.1
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.7e-20 103.6 55 90.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.4e-19 101.3 76 57.9
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 5.8e-18 96.7 259 33.2
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 4.9e-17 93.6 520 27.5
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 5.4e-16 90.1 163 35.0
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 9.3e-16 89.4 442 24.4
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.9e-14 84.0 70 61.4
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 3.3e-13 80.9 94 43.6
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.4e-11 75.5 81 51.9
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.8e-11 75.1 143 37.1
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.8e-11 75.1 132 35.6
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.4e-10 70.5 52 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.2e-09 68.2 148 35.1
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 8.4e-09 66.2 49 59.2
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.9e-08 65.1 66 50.0
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 3.2e-08 64.3 117 40.2
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 6.0e-07 60.1 75 42.7
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 1.0e-06 59.3 53 60.4


User provided reference genes

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