Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.3e-64 248.1 113 100.0
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.7e-23 112.8 66 81.8
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 2.2e-23 112.5 66 80.3
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 2.9e-23 112.1 58 87.9
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.4e-22 109.8 66 80.3
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.4e-22 109.8 66 78.8
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.4e-22 109.8 66 78.8
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.4e-22 109.8 53 92.5
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.4e-22 109.8 66 78.8
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.8e-22 109.4 53 92.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 80.3
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.8e-22 109.4 66 78.8
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.4e-22 109.0 66 78.8
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 3.2e-22 108.6 53 90.6
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.1e-22 108.2 66 77.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 7.0e-22 107.5 66 77.3
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 7.0e-22 107.5 53 92.5
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 9.2e-22 107.1 66 75.8
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 9.2e-22 107.1 66 75.8
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.2e-21 106.7 66 77.3
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.2e-21 106.7 66 77.3
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.2e-21 106.7 66 75.8
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-21 105.9 53 92.5
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-21 105.9 53 92.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 2.0e-21 105.9 66 77.3
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 3.5e-21 105.1 66 74.2
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.5e-21 105.1 53 88.7
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 4.6e-21 104.8 53 90.6
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 4.6e-21 104.8 66 78.8
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 5.9e-21 104.4 66 72.7
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 5.9e-21 104.4 53 90.6
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 7.8e-21 104.0 53 84.9
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 7.8e-21 104.0 53 84.9
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 7.8e-21 104.0 53 90.6
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 7.8e-21 104.0 66 74.2
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 7.8e-21 104.0 66 74.2
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.0e-20 103.6 53 90.6
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.0e-20 103.6 66 77.3
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.3e-20 103.2 66 75.8
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.3e-20 103.2 53 88.7
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.7e-20 102.8 65 73.8
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.7e-20 102.8 66 75.8
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.7e-20 102.8 53 88.7
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.7e-20 102.8 53 90.6
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-20 102.8 66 74.2
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.7e-20 102.8 66 72.7
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.7e-20 102.8 66 75.8
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.3e-20 102.4 53 86.8
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 3.0e-20 102.1 53 86.8
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 3.0e-20 102.1 66 74.2
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.0e-20 102.1 53 86.8
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.0e-20 102.1 53 86.8
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 3.9e-20 101.7 69 71.0
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.9e-20 101.7 66 72.7
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 5.0e-20 101.3 53 90.6
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 5.0e-20 101.3 53 90.6
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 5.0e-20 101.3 53 86.8
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 5.0e-20 101.3 53 86.8
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 6.6e-20 100.9 53 88.7
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 6.6e-20 100.9 53 88.7
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 6.6e-20 100.9 53 86.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 6.6e-20 100.9 66 74.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 8.6e-20 100.5 66 74.2
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.1e-19 100.1 66 74.2
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.5e-19 99.8 66 69.7
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.5e-19 99.8 66 72.7
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.5e-19 99.8 66 72.7
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.5e-19 99.8 64 75.0
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.5e-19 99.8 66 75.8
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.9e-19 99.4 53 84.9
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.5e-19 99.0 53 83.0
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 7.3e-19 97.4 53 83.0
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 7.3e-19 97.4 52 84.6
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 7.3e-19 97.4 52 84.6
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 7.3e-19 97.4 53 81.1
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 9.5e-19 97.1 53 83.0
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.2e-18 96.7 66 72.7
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-18 96.7 53 83.0
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.1e-18 95.9 53 79.2
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 3.6e-18 95.1 53 79.2
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 4.7e-18 94.7 63 69.8
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 8.0e-18 94.0 53 77.4
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.1e-17 93.6 81 56.8
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.8e-17 92.8 71 62.0
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.8e-17 92.8 66 71.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.8e-17 92.8 66 71.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.8e-17 92.8 66 71.2
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.8e-17 92.8 53 79.2
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.8e-17 92.8 53 79.2
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.8e-17 92.8 66 71.2
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.3e-17 92.4 66 69.7
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 3.1e-17 92.0 53 79.2
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.1e-17 92.0 53 79.2
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 3.1e-17 92.0 53 79.2
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 6.8e-17 90.9 53 79.2
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 6.8e-17 90.9 53 75.5
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 6.8e-17 90.9 53 75.5
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 8.9e-17 90.5 66 68.2
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 8.9e-17 90.5 55 76.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 8.9e-17 90.5 53 79.2
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.2e-16 90.1 53 77.4
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.2e-16 90.1 53 75.5
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.4e-16 88.6 66 66.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 3.4e-16 88.6 66 66.7
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.8e-16 87.8 47 85.1
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.7e-15 86.3 53 71.7
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 2.9e-15 85.5 53 77.4
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 6.4e-15 84.3 53 79.2
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 6.4e-15 84.3 43 90.7
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.1e-14 83.6 74 50.0
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 3.2e-14 82.0 113 45.1
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.0e-13 79.3 54 63.0
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.5e-13 78.6 53 71.7
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.7e-12 76.3 53 62.3
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.0e-12 75.5 54 59.3
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 8.6e-12 73.9 53 71.7
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.3e-11 72.0 66 59.1
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 8.1e-10 67.4 49 69.4
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 8.1e-10 67.4 60 56.7
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.1e-09 67.0 54 59.3
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 3.1e-09 65.5 46 67.4
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 4.0e-09 65.1 53 58.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.8e-09 64.3 46 67.4
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 8.9e-09 63.9 76 38.2
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.7e-07 59.7 31 83.9
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 8.3e-07 57.4 50 52.0
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 9.2e-06 53.9 46 54.3


User provided reference genes

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