Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002752 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 7.1e-40 166.8 82 100.0
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 6.7e-22 107.1 58 86.2
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 1.3e-20 102.8 58 84.5
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 1.6e-20 102.4 58 84.5
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 1.6e-20 102.4 58 82.8
Sed0007068 Sechium edule HOM05D001092 ORTHO05D000923 1.6e-20 102.4 65 76.9
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 2.1e-20 102.1 68 76.5
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 2.1e-20 102.1 58 86.2
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 2.1e-20 102.1 58 82.8
Oeu033911.2 Olea europaea HOM05D001092 ORTHO05D000923 2.8e-20 101.7 58 82.8
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 3.7e-20 101.3 58 81.0
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 3.7e-20 101.3 58 81.0
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 3.7e-20 101.3 58 81.0
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 4.8e-20 100.9 58 81.0
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 8.1e-20 100.1 58 81.0
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 8.1e-20 100.1 58 81.0
Gohir.A03G003250 Gossypium hirsutum HOM05D001092 ORTHO05D000923 8.1e-20 100.1 58 82.8
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 8.1e-20 100.1 58 82.8
MELO3C003359.2 Cucumis melo HOM05D001092 ORTHO05D000923 1.1e-19 99.8 65 73.8
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 1.1e-19 99.8 58 82.8
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 1.1e-19 99.8 58 82.8
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 1.4e-19 99.4 58 79.3
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.4e-19 99.4 58 82.8
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.4e-19 99.4 58 82.8
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 1.4e-19 99.4 58 82.8
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 1.8e-19 99.0 56 85.7
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 2.4e-19 98.6 58 79.3
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 3.1e-19 98.2 58 74.1
CsaV3_3G049680 Cucumis sativus L. HOM05D001092 ORTHO05D000923 4.0e-19 97.8 65 72.3
Thecc.03G236900 Theobroma cacao HOM05D001092 ORTHO05D000923 4.0e-19 97.8 58 82.8
COL.COLO4_06705 Corchorus olitorius HOM05D001092 ORTHO05D000923 5.3e-19 97.4 58 82.8
MSTRG.1961 Avicennia marina HOM05D001092 ORTHO05D000923 6.9e-19 97.1 58 79.3
Cpa.g.sc98.56 Carica papaya HOM05D001092 ORTHO05D000923 6.9e-19 97.1 56 82.1
ClCG09G012520 Citrullus lanatus HOM05D001092 ORTHO05D000923 6.9e-19 97.1 59 74.6
Ciclev10024056m.g Citrus clementina HOM05D001092 ORTHO05D000923 9.0e-19 96.7 68 70.6
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 9.0e-19 96.7 58 74.1
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 1.2e-18 96.3 58 75.9
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.2e-18 96.3 58 79.3
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 1.2e-18 96.3 67 73.1
Ah.12g053800 Amaranthus hybridus HOM05D001092 ORTHO05D000923 1.5e-18 95.9 58 75.9
Migut.E00809 Erythranthe guttata HOM05D001092 ORTHO05D000923 2.0e-18 95.5 58 75.9
Gohir.A08G161600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.0e-18 95.5 67 74.6
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 2.0e-18 95.5 58 75.9
Peaxi162Scf00084g00119 Petunia axillaris HOM05D001092 ORTHO05D000923 2.0e-18 95.5 68 67.6
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 2.6e-18 95.1 58 81.0
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 3.4e-18 94.7 58 77.6
Solyc08g077490.2 Solanum lycopersicum HOM05D001092 ORTHO05D000923 3.4e-18 94.7 68 64.7
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 3.4e-18 94.7 58 74.1
CAN.G1445.5 Capsicum annuum HOM05D001092 ORTHO05D000923 4.5e-18 94.4 58 74.1
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 4.5e-18 94.4 58 74.1
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 4.5e-18 94.4 68 64.7
Nitab4.5_0006135g0040 Nicotiana tabacum HOM05D001092 ORTHO05D000923 4.5e-18 94.4 59 72.9
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 4.5e-18 94.4 58 81.0
AUR62007201 Chenopodium quinoa HOM05D001092 ORTHO05D000923 5.8e-18 94.0 56 78.6
Gorai.004G190500 Gossypium raimondii HOM05D001092 ORTHO05D000923 5.8e-18 94.0 67 73.1
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 5.8e-18 94.0 58 77.6
MBI04_g20740_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 5.8e-18 94.0 59 74.6
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 5.8e-18 94.0 68 63.2
Phvul.002G003000 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 7.6e-18 93.6 58 72.4
vmacro00375 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 7.6e-18 93.6 58 79.3
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 1.0e-17 93.2 56 75.0
HPP92_014925 Vanilla planifolia HOM05D001092 ORTHO05D000923 1.0e-17 93.2 68 64.7
HPP92_014930 Vanilla planifolia HOM05D001092 ORTHO05D000923 1.0e-17 93.2 68 64.7
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 1.3e-17 92.8 58 74.1
AUR62018801 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.7e-17 92.4 56 76.8
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 1.7e-17 92.4 58 72.4
Aa31LG2G13220 Aethionema arabicum HOM05D001092 ORTHO05D000923 2.2e-17 92.0 68 63.2
EL10Ac5g12216 Beta vulgaris HOM05D001092 ORTHO05D000923 2.9e-17 91.7 68 63.2
Ca_30451_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 2.9e-17 91.7 56 75.0
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 2.9e-17 91.7 58 72.4
unitig_21.g20375 Utricularia gibba HOM05D001092 ORTHO05D000923 2.9e-17 91.7 56 78.6
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 3.8e-17 91.3 58 72.4
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 3.8e-17 91.3 58 72.4
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 3.8e-17 91.3 58 70.7
Rhsim11G0008200 Rhododendron simsii HOM05D001092 ORTHO05D000923 3.8e-17 91.3 58 75.9
SHI07558 Sapria himalayana HOM05D001092 ORTHO05D000923 4.9e-17 90.9 58 74.1
TPR.G33938 Trifolium pratense HOM05D001092 ORTHO05D000923 8.4e-17 90.1 58 70.7
AL7G37590 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 1.1e-16 89.7 68 61.8
AT4G17140 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 1.1e-16 89.7 68 61.8
Zm00001eb390790 Zea mays HOM05D001092 ORTHO05D000923 4.2e-16 87.8 68 61.8
Carub.0007s2427 Capsella rubella HOM05D001092 ORTHO05D000923 5.5e-16 87.4 68 58.8
Thhalv10024176m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 9.3e-16 86.7 59 67.8
MBI16_g23725_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 1.6e-15 85.9 58 70.7
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 3.5e-15 84.7 68 57.4
BolC8t48437H Brassica oleracea HOM05D001092 ORTHO05D000923 3.5e-15 84.7 68 57.4
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 3.5e-15 84.7 68 57.4
CDE02G1948 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 4.6e-15 84.3 58 65.5
MBI01_g46566_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 6.0e-15 84.0 58 69.0
MBI10_g27924_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 6.0e-15 84.0 58 69.0
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 6.0e-15 84.0 68 55.9
MBI01_g02161_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 8.7e-14 80.1 54 72.2
MBI03_g02128_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 8.7e-14 80.1 54 72.2
MBI09_g20573_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 8.7e-14 80.1 54 72.2
MBI19_g46604_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 8.7e-14 80.1 54 72.2
SEGI_38876 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 1.5e-13 79.3 57 56.1
MBI08_g30373_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 2.5e-13 78.6 54 70.4
SEGI_34503 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 4.3e-13 77.8 58 53.4
MBI06_g46048_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 5.7e-13 77.4 54 68.5
BcaC07g38054 Brassica carinata HOM05D001092 ORTHO05D000923 2.8e-12 75.1 65 53.8
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 4.8e-12 74.3 58 51.7
Mapoly0105s0039 Marchantia polymorpha HOM05D001092 ORTHO05D000923 4.0e-11 71.2 58 46.6
AagrBONN_evm.TU.Sc2ySwM_362.876 Anthoceros agrestis HOM05D001092 ORTHO05D000923 2.6e-10 68.6 56 55.4
Pp3c18_1370 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.6e-10 68.6 58 48.3
Pp3c18_1376 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.6e-10 68.6 58 48.3
Haze_08328 Corylus avellana HOM05D001092 ORTHO05D000923 3.8e-09 64.7 36 88.9
FAN08G1156 Fragaria x ananassa HOM05D001092 ORTHO05D000923 2.7e-07 58.5 37 73.0


User provided reference genes

Program Settings