Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 4.3e-101 371.3 185 100.0
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.5e-77 292.4 208 76.4
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 8.1e-76 287.3 197 77.2
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.1e-71 272.7 159 85.5
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.1e-71 272.7 159 85.5
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 2.5e-69 265.8 159 82.4
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 1.1e-67 260.4 159 80.5
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 6.9e-67 257.7 159 79.2
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.4e-66 255.4 159 78.0
CSS0038211 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 7.6e-66 254.2 164 79.9
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 9.9e-66 253.8 159 77.4
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.7e-65 253.1 159 78.0
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 1.7e-65 253.1 159 78.0
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.7e-65 253.1 159 77.4
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 1.7e-65 253.1 161 77.0
CSS0016001 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 3.8e-65 251.9 165 79.4
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 6.4e-65 251.1 159 76.7
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 6.4e-65 251.1 159 77.4
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 6.4e-65 251.1 159 76.1
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.1e-64 250.4 159 76.7
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 1.4e-64 250.0 159 76.1
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 1.4e-64 250.0 159 76.7
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.9e-64 249.6 159 77.4
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 1.9e-64 249.6 159 78.0
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 2.4e-64 249.2 159 76.7
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 2.4e-64 249.2 159 76.1
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 3.2e-64 248.8 161 75.8
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 4.2e-64 248.4 159 76.7
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 4.2e-64 248.4 159 76.1
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 4.2e-64 248.4 159 76.1
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 5.5e-64 248.1 159 74.2
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 7.1e-64 247.7 159 76.1
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 9.3e-64 247.3 159 75.5
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.2e-63 246.9 159 75.5
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.2e-63 246.9 159 74.2
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 1.2e-63 246.9 159 74.2
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 1.2e-63 246.9 159 74.2
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.2e-63 246.9 171 71.9
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 1.2e-63 246.9 159 76.7
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 1.6e-63 246.5 164 75.0
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 2.1e-63 246.1 159 74.2
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 2.1e-63 246.1 159 74.2
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 2.1e-63 246.1 159 74.2
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.1e-63 246.1 159 73.6
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.1e-63 246.1 159 74.2
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.7e-63 245.7 159 75.5
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 3.5e-63 245.4 159 74.8
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 3.5e-63 245.4 159 74.8
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 3.5e-63 245.4 159 74.2
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 4.6e-63 245.0 159 73.6
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 4.6e-63 245.0 159 73.6
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 4.6e-63 245.0 159 73.6
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 4.6e-63 245.0 159 74.2
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 6.0e-63 244.6 159 73.6
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 7.9e-63 244.2 159 74.2
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 7.9e-63 244.2 159 74.2
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.0e-62 243.8 159 75.5
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 1.0e-62 243.8 159 73.0
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 1.0e-62 243.8 159 74.8
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 1.0e-62 243.8 159 74.2
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 1.3e-62 243.4 159 73.0
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.3e-62 243.4 159 73.0
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 1.3e-62 243.4 159 73.0
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 1.3e-62 243.4 157 73.9
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.3e-62 243.4 159 75.5
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 1.3e-62 243.4 159 74.2
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 1.3e-62 243.4 159 74.2
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 1.8e-62 243.0 159 72.3
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.8e-62 243.0 159 74.8
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 2.3e-62 242.7 159 74.2
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 2.3e-62 242.7 159 74.2
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 2.3e-62 242.7 159 74.2
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 3.0e-62 242.3 159 72.3
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 3.0e-62 242.3 159 74.8
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 3.0e-62 242.3 159 73.0
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 3.0e-62 242.3 159 73.0
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 3.0e-62 242.3 159 72.3
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 3.9e-62 241.9 159 74.2
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 5.1e-62 241.5 161 72.0
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 5.1e-62 241.5 159 72.3
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 5.1e-62 241.5 159 72.3
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 6.7e-62 241.1 159 71.7
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 6.7e-62 241.1 159 74.2
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.1e-61 240.4 159 73.6
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 1.1e-61 240.4 157 73.9
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 1.5e-61 240.0 159 72.3
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.5e-61 240.0 159 72.3
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 1.5e-61 240.0 159 72.3
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 1.5e-61 240.0 159 72.3
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 1.5e-61 240.0 159 72.3
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 1.9e-61 239.6 159 71.7
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 2.5e-61 239.2 159 73.6
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 2.5e-61 239.2 159 73.0
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 2.5e-61 239.2 159 72.3
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 3.3e-61 238.8 159 73.0
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.3e-61 238.8 159 73.0
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.3e-61 238.8 159 73.0
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.3e-61 238.8 159 73.0
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 4.3e-61 238.4 159 72.3
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 4.3e-61 238.4 157 73.2
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 7.4e-61 237.7 159 72.3
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 7.4e-61 237.7 159 73.0
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 7.4e-61 237.7 159 73.0
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 9.6e-61 237.3 159 70.4
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 9.6e-61 237.3 159 71.7
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.3e-60 236.9 159 71.7
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.3e-60 236.9 159 72.3
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 1.3e-60 236.9 159 72.3
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 2.1e-60 236.1 159 72.3
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 2.1e-60 236.1 159 71.7
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 4.8e-60 235.0 159 70.4
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 4.8e-60 235.0 159 70.4
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 4.8e-60 235.0 159 71.1
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 6.2e-60 234.6 159 71.7
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 6.2e-60 234.6 159 72.3
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 8.1e-60 234.2 159 70.4
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.1e-59 233.8 159 72.3
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 1.1e-59 233.8 159 71.7
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 1.1e-59 233.8 159 72.3
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 3.1e-59 232.3 159 71.7
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 3.1e-59 232.3 159 71.1
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 3.1e-59 232.3 159 71.1
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 4.0e-59 231.9 157 70.7
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 4.0e-59 231.9 161 69.6
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 9.0e-59 230.7 159 69.2
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 9.0e-59 230.7 159 71.7
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 1.2e-58 230.3 159 70.4
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 1.2e-58 230.3 159 69.8
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 1.5e-58 229.9 159 69.8
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 2.0e-58 229.6 159 69.8
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 2.0e-58 229.6 152 73.7
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 3.4e-58 228.8 161 68.3
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 3.4e-58 228.8 161 68.3
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 4.5e-58 228.4 159 70.4
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 5.8e-58 228.0 161 68.9
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 5.8e-58 228.0 159 71.1
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 1.0e-57 227.3 159 69.2
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 3.8e-57 225.3 159 68.6
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 4.9e-57 224.9 159 67.9
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 8.4e-57 224.2 159 67.3
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 2.5e-56 222.6 159 67.3
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 9.3e-56 220.7 158 67.1
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 6.7e-54 214.5 160 65.0
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 9.6e-53 210.7 142 71.8
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 2.4e-51 206.1 159 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 2.6e-50 202.6 160 61.2
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 4.5e-50 201.8 159 61.6
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 6.5e-49 198.0 158 60.1
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 4.2e-48 195.3 160 59.4
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.2e-47 193.7 159 59.7
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.2e-47 193.7 159 59.7
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 3.6e-47 192.2 160 58.1
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 1.0e-46 190.7 160 56.2
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 5.0e-41 171.8 115 73.0
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 2.3e-38 162.9 115 68.7
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 6.7e-38 161.4 115 69.6
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 1.5e-34 150.2 147 55.8
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 3.2e-32 142.5 158 48.1
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 7.2e-32 141.4 105 65.7
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 5.7e-29 131.7 159 51.6
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 6.5e-25 118.2 165 39.4
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 8.5e-25 117.9 155 40.6
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 8.0e-23 111.3 153 41.2
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 8.2e-20 101.3 85 55.3
CDE09G1104 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 1.1e-19 100.9 164 42.7
TPR.G40483 Trifolium pratense HOM05D003507 ORTHO05D004324 1.5e-16 90.5 46 87.0
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 4.0e-14 82.4 100 47.0
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.1e-11 74.3 46 73.9
Dinv22443 Davidia involucrata HOM05D003507 ORTHO05D182987 1.6e-10 70.5 78 57.7
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 1.2e-07 60.8 46 58.7


User provided reference genes

Program Settings