Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.3e-279 965.3 628 100.0
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 2.2e-229 799.3 638 79.5
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 5.7e-222 774.6 638 80.7
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 3.0e-207 725.7 637 76.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 8.8e-207 724.2 538 81.8
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.7e-205 719.9 644 74.8
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 5.3e-204 714.9 640 73.6
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.1e-201 707.2 641 73.9
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 8.3e-197 691.0 637 71.1
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 3.8e-194 682.2 640 74.7
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 5.0e-194 681.8 639 71.5
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 3.3e-193 679.1 643 68.7
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 3.3e-193 679.1 636 71.5
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.2e-193 678.7 642 72.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 8.0e-192 674.5 643 70.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 6.8e-191 671.4 638 70.1
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.9e-191 671.0 643 71.1
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-190 670.6 643 70.6
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 3.7e-189 665.6 637 65.1
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.8e-188 663.3 645 66.0
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 7.0e-188 661.4 638 68.0
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 9.2e-188 661.0 636 70.6
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 5.9e-187 658.3 642 68.2
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 5.9e-187 658.3 690 64.2
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 7.8e-187 657.9 638 68.5
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 1.7e-186 656.8 634 68.9
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.9e-186 656.0 642 67.6
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.3e-183 646.4 635 71.0
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 3.0e-183 646.0 634 71.3
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 4.0e-183 645.6 477 82.8
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.6e-182 642.9 633 72.7
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 4.1e-180 635.6 637 70.6
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 4.1e-180 635.6 661 69.9
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 7.0e-180 634.8 543 71.1
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.0e-178 630.9 636 62.1
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 3.0e-178 629.4 656 68.4
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.1e-177 627.5 642 67.4
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 4.3e-177 625.5 634 64.8
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 7.3e-177 624.8 546 66.1
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 9.5e-177 624.4 531 69.1
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.2e-176 624.0 638 64.9
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.3e-173 614.0 525 67.2
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.7e-173 613.6 502 72.9
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 2.9e-173 612.8 639 66.5
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 3.7e-173 612.5 526 71.9
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 6.4e-173 611.7 640 66.6
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.4e-172 610.5 636 67.8
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 2.4e-172 609.8 637 69.2
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 7.0e-172 608.2 524 68.7
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 9.2e-172 607.8 530 70.6
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.2e-171 607.4 530 70.4
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 6.0e-171 605.1 513 72.3
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 9.5e-169 597.8 640 67.5
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 2.1e-168 596.7 565 64.8
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.1e-168 596.7 556 71.0
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 4.7e-168 595.5 645 61.4
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 8.1e-168 594.7 639 62.0
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 8.1e-168 594.7 630 66.8
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 8.1e-168 594.7 688 64.2
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 3.1e-167 592.8 635 56.9
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 4.0e-167 592.4 664 61.3
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 8.9e-167 591.3 697 60.8
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.2e-163 580.9 645 67.6
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 7.8e-163 578.2 639 67.1
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 3.0e-162 576.2 535 71.8
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 5.1e-162 575.5 527 70.6
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.1e-161 574.3 641 63.2
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 8.1e-160 568.2 533 66.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 8.9e-159 564.7 638 64.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.2e-158 564.3 639 67.1
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 1.7e-157 560.5 537 71.1
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 2.9e-157 559.7 514 70.0
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.8e-157 559.3 649 62.9
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 7.1e-156 555.1 425 73.2
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.0e-154 551.2 632 64.2
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 8.7e-154 548.1 420 72.4
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.9e-153 547.0 523 62.0
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.8e-152 543.1 635 63.0
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 6.2e-152 542.0 680 54.6
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.8e-151 540.4 524 62.6
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.2e-150 537.7 537 58.1
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 2.0e-150 537.0 574 60.1
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.2e-149 533.5 478 69.9
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 4.9e-149 532.3 552 61.4
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 3.5e-147 526.2 636 62.1
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 2.3e-146 523.5 636 62.7
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.1e-140 504.6 525 62.7
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 3.9e-138 496.1 664 60.7
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 9.6e-137 491.5 545 56.1
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.3e-136 491.1 644 59.6
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 5.3e-135 485.7 463 60.3
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 3.2e-132 476.5 371 76.8
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 9.3e-132 474.9 651 59.9
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 5.1e-130 469.2 641 58.5
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.5e-129 467.6 337 73.9
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 4.8e-128 462.6 651 58.7
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 8.2e-128 461.8 631 58.8
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 3.1e-127 459.9 436 60.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 9.0e-127 458.4 649 56.4
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.7e-125 454.1 527 61.5
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.2e-125 453.8 421 60.8
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 3.2e-124 449.9 643 57.7
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 5.5e-124 449.1 644 58.2
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.2e-123 448.0 524 59.0
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 3.5e-123 446.4 651 57.1
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.1e-119 434.9 516 59.3
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 1.0e-114 418.3 514 52.9
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 1.0e-109 401.7 544 53.1
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.3e-109 401.4 374 68.2
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-109 401.0 374 67.9
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.7e-109 401.0 374 67.9
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.2e-109 400.6 374 68.2
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.1e-107 394.0 535 54.8
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.2e-104 384.0 311 76.8
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.1e-100 371.7 321 62.9
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.1e-95 353.2 423 55.8
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 2.6e-94 350.5 336 57.7
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.8e-93 346.7 342 56.4
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.0e-90 338.6 360 53.3
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.3e-88 331.6 299 60.2
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.3e-74 284.3 390 47.2
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.2e-73 282.0 397 44.3
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 7.5e-73 279.3 510 40.6
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 5.0e-69 266.5 527 39.8
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 3.2e-63 247.3 274 53.6
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 7.8e-62 242.7 269 67.7
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 6.6e-61 239.6 507 41.2
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 4.0e-58 230.3 245 53.1
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.2e-49 202.2 164 65.2
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.4e-47 194.5 340 50.0
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.5e-44 184.5 136 78.7
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.4e-42 178.7 103 82.5
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 1.3e-40 172.2 174 59.8
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.2e-33 149.1 283 38.2
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 7.1e-31 139.8 266 39.1
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 3.1e-26 124.4 333 31.5
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.9e-24 117.9 153 54.2
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 1.2e-22 112.5 258 30.6
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.3e-21 108.2 88 60.2
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 2.4e-18 98.2 227 57.7
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 2.4e-18 98.2 61 80.3
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 4.0e-18 97.4 156 71.2
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.1e-15 89.4 53 75.5
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.5e-12 78.2 41 87.8
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 6.2e-11 73.6 208 58.7
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.0e-08 66.2 160 38.1
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.9e-08 64.7 139 56.1
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 9.3e-07 59.7 43 67.4
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.1e-06 58.5 37 73.0


User provided reference genes

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