Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002398 Camellia sinensis var. sinensis HOM05D001024 ORTHO05D111589 1.3e-47 192.6 89 100.0
Actinidia20807 Actinidia chinensis HOM05D001024 ORTHO05D000878 2.2e-10 68.9 33 97.0
CSS0020298 Camellia sinensis var. sinensis HOM05D001024 ORTHO05D000878 2.2e-10 68.9 33 97.0
CSS0021001 Camellia sinensis var. sinensis HOM05D001024 ORTHO05D000878 2.2e-10 68.9 33 97.0
CSS0026870 Camellia sinensis var. sinensis HOM05D001024 ORTHO05D000878 2.2e-10 68.9 33 97.0
Dinv25368 Davidia involucrata HOM05D001024 ORTHO05D003846 2.2e-10 68.9 33 97.0
Rhsim05G0233300 Rhododendron simsii HOM05D001024 ORTHO05D000878 2.2e-10 68.9 33 97.0
Lj2C56G12 Lonicera japonica HOM05D001024 ORTHO05D000878 6.3e-10 67.4 55 61.8
Cc06_g00210 Coffea canephora HOM05D001024 ORTHO05D000878 1.4e-09 66.2 33 90.9
Dinv16942 Davidia involucrata HOM05D001024 ORTHO05D000878 1.8e-09 65.9 33 93.9
Migut.J00012 Erythranthe guttata HOM05D001024 ORTHO05D000878 1.8e-09 65.9 61 59.0
Lj3A939G96 Lonicera japonica HOM05D001024 ORTHO05D000878 1.8e-09 65.9 33 90.9
CAN.G110.3 Capsicum annuum HOM05D001024 ORTHO05D000878 3.1e-09 65.1 33 87.9
Nitab4.5_0001203g0040 Nicotiana tabacum HOM05D001024 ORTHO05D000878 3.1e-09 65.1 33 87.9
Nitab4.5_0010141g0010 Nicotiana tabacum HOM05D001024 ORTHO05D000878 3.1e-09 65.1 33 87.9
Peaxi162Scf00374g00318 Petunia axillaris HOM05D001024 ORTHO05D000878 3.1e-09 65.1 33 84.8
Solyc09g031930.3 Solanum lycopersicum HOM05D001024 ORTHO05D000878 3.1e-09 65.1 33 87.9
Sopen09g025960 Solanum pennellii HOM05D001024 ORTHO05D000878 3.1e-09 65.1 33 87.9
Atru.chr8.64 Acer truncatum HOM05D001024 ORTHO05D000878 4.1e-09 64.7 33 87.9
Ciclev10012376m.g Citrus clementina HOM05D001024 ORTHO05D000878 4.1e-09 64.7 33 87.9
MSTRG.18928 Avicennia marina HOM05D001024 ORTHO05D000878 9.2e-09 63.5 40 72.5
BcaB02g09186 Brassica carinata HOM05D001024 ORTHO05D000878 9.2e-09 63.5 33 84.8
TWI53G1454 Tripterygium wilfordii HOM05D001024 ORTHO05D000878 9.2e-09 63.5 34 85.3
Cfa017001 Carpinus fangiana HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 87.9
Haze_21205 Corylus avellana HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 87.9
Gohir.D10G113900 Gossypium hirsutum HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 87.9
Gorai.011G125700 Gossypium raimondii HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 87.9
HanXRQChr06g0179611 Helianthus annuus HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 87.9
HanXRQChr16g0516281 Helianthus annuus HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 87.9
Solyc10g074870.2 Solanum lycopersicum HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 84.8
Sopen10g027360 Solanum pennellii HOM05D001024 ORTHO05D000878 1.2e-08 63.2 33 84.8
Lalb_Chr19g0123901 Lupinus albus HOM05D001024 ORTHO05D000878 1.6e-08 62.8 40 72.5
PGSC0003DMG400027702 Solanum tuberosum HOM05D001024 ORTHO05D000878 1.6e-08 62.8 33 81.8
CiPaw.09G223300 Carya illinoinensis HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
DCAR_023963 Daucus carota HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 81.8
FvH4_6g09430 Fragaria vesca HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
FAN02G4531 Fragaria x ananassa HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
FAN05G0920 Fragaria x ananassa HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
FAN09G4089 Fragaria x ananassa HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
FAN14G5572 Fragaria x ananassa HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
MD04G1177800 Malus domestica HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
MD12G1193400 Malus domestica HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
Prupe.6G297700 Prunus persica HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
RcHm_v2.0_Chr3g0459891 Rosa chinensis HOM05D001024 ORTHO05D000878 2.0e-08 62.4 33 84.8
arahy.Tifrunner.gnm1.ann1.I0WHJK Arachis hypogaea HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
arahy.Tifrunner.gnm1.ann1.U4VKB6 Arachis hypogaea HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
CiPaw.10G166600 Carya illinoinensis HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
MELO3C031041.2 Cucumis melo HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 87.9
Glyma.03G001400 Glycine max HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Glyma.09G271700 Glycine max HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Glyma.16G221200 Glycine max HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Glyma.18G217500 Glycine max HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Lsat_1_v5_gn_8_109621 Lactuca sativa HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Oeu007822.1 Olea europaea HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Phvul.008G079200 Phaseolus vulgaris HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Phvul.010G059400 Phaseolus vulgaris HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
TPR.G30732 Trifolium pratense HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
vmacro08956 Vaccinium macrocarpon HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 87.9
VMungo0331G0429 Vigna mungo HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
VMungo1383G2653 Vigna mungo HOM05D001024 ORTHO05D000878 2.7e-08 62.0 33 84.8
Gohir.A02G001500 Gossypium hirsutum HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 81.8
Gohir.A05G328300 Gossypium hirsutum HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
Gohir.D02G001800 Gossypium hirsutum HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 81.8
Gohir.D05G329300 Gossypium hirsutum HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
Gorai.005G002300 Gossypium raimondii HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 81.8
Gorai.009G352600 Gossypium raimondii HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
Manes.09G121700 Manihot esculenta HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
Potri.006G111400 Populus trichocarpa HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
Potri.016G140800 Populus trichocarpa HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
Sabra06G0086700 Salix brachista HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
TWI74G1606 Tripterygium wilfordii HOM05D001024 ORTHO05D000878 3.5e-08 61.6 33 84.8
Aa31LG5G23350 Aethionema arabicum HOM05D001024 ORTHO05D000878 4.5e-08 61.2 33 84.8
ClCG04G006180 Citrullus lanatus HOM05D001024 ORTHO05D000878 4.5e-08 61.2 33 87.9
MELO3C025257.2 Cucumis melo HOM05D001024 ORTHO05D000878 4.5e-08 61.2 33 87.9
CsaV3_4G027380 Cucumis sativus L. HOM05D001024 ORTHO05D000878 4.5e-08 61.2 33 87.9
Sed0010727 Sechium edule HOM05D001024 ORTHO05D000878 4.5e-08 61.2 33 87.9
Sed0017707 Sechium edule HOM05D001024 ORTHO05D000878 4.5e-08 61.2 41 73.2
Sc20g0007230 Simmondsia chinensis HOM05D001024 ORTHO05D000878 4.5e-08 61.2 33 81.8
SGA_v2.0_scaffold373G50195 Striga asiatica HOM05D001024 ORTHO05D000878 4.5e-08 61.2 33 81.8
ClCG10G022830 Citrullus lanatus HOM05D001024 ORTHO05D000878 5.9e-08 60.8 33 84.8
COL.COLO4_05678 Corchorus olitorius HOM05D001024 ORTHO05D000878 5.9e-08 60.8 33 81.8
Duzib151G0449 Durio zibethinus HOM05D001024 ORTHO05D000878 5.9e-08 60.8 33 81.8
Duzib268G0873 Durio zibethinus HOM05D001024 ORTHO05D000878 5.9e-08 60.8 33 81.8
QL07p031312 Quercus lobata HOM05D001024 ORTHO05D000878 5.9e-08 60.8 33 84.8
QL07p031590 Quercus lobata HOM05D001024 ORTHO05D000878 5.9e-08 60.8 33 84.8
Thecc.04G147900 Theobroma cacao HOM05D001024 ORTHO05D000878 5.9e-08 60.8 33 81.8
AL4G35880 Arabidopsis lyrata HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
AT2G38610 Arabidopsis thaliana HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
BcaB01g03672 Brassica carinata HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
Carub.0004s2059 Capsella rubella HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
CARHR133280 Cardamine hirsuta HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
Ca_07793_v3 Cicer arietinum L. HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
CsaV3_3G032980 Cucumis sativus L. HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 84.8
Thhalv10017040m.g Eutrema salsugineum HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
Lalb_Chr01g0023951 Lupinus albus HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
Medtr7g074100 Medicago truncatula HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
Oeu026930.1 Olea europaea HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 84.8
Sp4g20940 Schrenkiella parvula HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
TPR.G24296 Trifolium pratense HOM05D001024 ORTHO05D000878 7.8e-08 60.5 33 81.8
Gohir.A10G152300 Gossypium hirsutum HOM05D001024 ORTHO05D000878 1.0e-07 60.1 33 81.8
Lj3g0027266 Lotus japonicus HOM05D001024 ORTHO05D000878 1.0e-07 60.1 33 81.8
Peaxi162Scf00732g00145 Petunia axillaris HOM05D001024 ORTHO05D000878 1.0e-07 60.1 30 86.7
Carub.0003s0775 Capsella rubella HOM05D001024 ORTHO05D000878 1.3e-07 59.7 33 81.8
Cpa.g.sc0.73 Carica papaya HOM05D001024 ORTHO05D000878 1.3e-07 59.7 33 84.8
Manes.08G168100 Manihot esculenta HOM05D001024 ORTHO05D000878 1.7e-07 59.3 33 81.8
Medtr8g005430 Medicago truncatula HOM05D001024 ORTHO05D000878 1.7e-07 59.3 34 76.5
Medtr8g005550 Medicago truncatula HOM05D001024 ORTHO05D000878 1.7e-07 59.3 34 76.5
Medtr8g006580 Medicago truncatula HOM05D001024 ORTHO05D000878 1.7e-07 59.3 34 76.5
Medtr8g006605 Medicago truncatula HOM05D001024 ORTHO05D000878 1.7e-07 59.3 34 76.5
Hund03686 Selenicereus undatus HOM05D001024 ORTHO05D000878 1.7e-07 59.3 33 75.8
THA.LOC104806654 Tarenaya hassleriana HOM05D001024 ORTHO05D000878 1.7e-07 59.3 33 81.8
GSVIVG01029865001 Vitis vinifera HOM05D001024 ORTHO05D000878 1.7e-07 59.3 33 78.8
BcaC02g12011 Brassica carinata HOM05D001024 ORTHO05D000878 2.3e-07 58.9 34 82.4
A05p07470 Brassica napus HOM05D001024 ORTHO05D000878 2.3e-07 58.9 34 82.4
C04p08940 Brassica napus HOM05D001024 ORTHO05D000878 2.3e-07 58.9 34 82.4
BolC4t22484H Brassica oleracea HOM05D001024 ORTHO05D000878 2.3e-07 58.9 34 82.4
BraA05t19712Z Brassica rapa HOM05D001024 ORTHO05D000878 2.3e-07 58.9 34 82.4
CAN.G659.19 Capsicum annuum HOM05D001024 ORTHO05D000878 2.3e-07 58.9 32 78.1
TWI77G0134 Tripterygium wilfordii HOM05D001024 ORTHO05D000878 2.3e-07 58.9 33 81.8
AT3G08620 Arabidopsis thaliana HOM05D001024 ORTHO05D000878 3.9e-07 58.2 33 75.8
Ca_23108_v3 Cicer arietinum L. HOM05D001024 ORTHO05D000878 3.9e-07 58.2 33 78.8
Lj1g0006891 Lotus japonicus HOM05D001024 ORTHO05D000878 3.9e-07 58.2 33 78.8
Rhsim04G0120500 Rhododendron simsii HOM05D001024 ORTHO05D000878 3.9e-07 58.2 32 84.4
Sed0018939 Sechium edule HOM05D001024 ORTHO05D000878 3.9e-07 58.2 32 84.4
CARHR082920 Cardamine hirsuta HOM05D001024 ORTHO05D000878 5.0e-07 57.8 33 75.8
THA.LOC104823346 Tarenaya hassleriana HOM05D001024 ORTHO05D000878 5.0e-07 57.8 33 78.8
Ah.10g024710 Amaranthus hybridus HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 72.7
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 72.7
EL10Ac7g17139 Beta vulgaris HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 72.7
AUR62006450 Chenopodium quinoa HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 72.7
AUR62029803 Chenopodium quinoa HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 72.7
Oeu035180.1 Olea europaea HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 78.8
PGR004G2616 Punica granatum HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 78.8
Hund19737 Selenicereus undatus HOM05D001024 ORTHO05D000878 6.6e-07 57.4 33 72.7
AL3G19610 Arabidopsis lyrata HOM05D001024 ORTHO05D000878 8.6e-07 57.0 33 72.7
Aa31LG5G11360 Aethionema arabicum HOM05D001024 ORTHO05D000878 1.1e-06 56.6 33 78.8
Aa31LG5G18680 Aethionema arabicum HOM05D001024 ORTHO05D000878 1.1e-06 56.6 33 78.8
Eucgr.A00807 Eucalyptus grandis HOM05D001024 ORTHO05D000878 1.5e-06 56.2 35 71.4
Nn2g10222 Nelumbo nucifera HOM05D001024 ORTHO05D000878 1.5e-06 56.2 33 75.8
SalBow4G3123 Salvia bowleyana HOM05D001024 ORTHO05D000878 1.5e-06 56.2 39 64.1
TAR623G0437 Trochodendron aralioides HOM05D001024 ORTHO05D000878 1.5e-06 56.2 34 73.5
BcaC01g05526 Brassica carinata HOM05D001024 ORTHO05D000878 1.9e-06 55.8 34 79.4
A03p21430 Brassica napus HOM05D001024 ORTHO05D000878 1.9e-06 55.8 34 79.4
C03p25340 Brassica napus HOM05D001024 ORTHO05D000878 1.9e-06 55.8 34 79.4
BolC3t14928H Brassica oleracea HOM05D001024 ORTHO05D000878 1.9e-06 55.8 34 79.4
BraA03t11379Z Brassica rapa HOM05D001024 ORTHO05D000878 1.9e-06 55.8 34 79.4
THA.LOC104823334 Tarenaya hassleriana HOM05D001024 ORTHO05D000878 1.9e-06 55.8 33 75.8
THA.LOC104827075 Tarenaya hassleriana HOM05D001024 ORTHO05D000878 1.9e-06 55.8 33 75.8
MSTRG.10199 Avicennia marina HOM05D001024 ORTHO05D000878 3.3e-06 55.1 33 72.7
Nitab4.5_0001215g0080 Nicotiana tabacum HOM05D001024 ORTHO05D000878 3.3e-06 55.1 33 75.8
TAR633G0243 Trochodendron aralioides HOM05D001024 ORTHO05D000878 3.3e-06 55.1 33 75.8
BcaC05g29599 Brassica carinata HOM05D001024 ORTHO05D000878 4.3e-06 54.7 32 78.1
A05p40160 Brassica napus HOM05D001024 ORTHO05D000878 4.3e-06 54.7 32 78.1
C05p59240 Brassica napus HOM05D001024 ORTHO05D000878 4.3e-06 54.7 32 78.1
BolC5t34573H Brassica oleracea HOM05D001024 ORTHO05D000878 4.3e-06 54.7 32 78.1
Thhalv10021281m.g Eutrema salsugineum HOM05D001024 ORTHO05D000878 4.3e-06 54.7 32 78.1
Sp3g07070 Schrenkiella parvula HOM05D001024 ORTHO05D000878 4.3e-06 54.7 32 78.1
ECA236G0958 Erigeron canadensis HOM05D001024 ORTHO05D000878 5.6e-06 54.3 26 92.3
MBI03_g02708_MAGBIO Magnolia biondii HOM05D001024 ORTHO05D000878 5.6e-06 54.3 33 69.7
Sabra04G0157300 Salix brachista HOM05D001024 ORTHO05D000878 5.6e-06 54.3 27 88.9
Nn5g26788 Nelumbo nucifera HOM05D001024 ORTHO05D000878 7.3e-06 53.9 33 75.8
TAR369G1039 Trochodendron aralioides HOM05D001024 ORTHO05D000878 7.3e-06 53.9 32 75.0
vmacro20394 Vaccinium macrocarpon HOM05D001024 ORTHO05D000878 7.3e-06 53.9 33 78.8
HanXRQChr10g0286171 Helianthus annuus HOM05D001024 ORTHO05D000878 9.5e-06 53.5 34 79.4
Nitab4.5_0007589g0010 Nicotiana tabacum HOM05D001024 ORTHO05D000878 9.5e-06 53.5 33 75.8
SalBow4G0245 Salvia bowleyana HOM05D000635 ORTHO05D000488 9.5e-06 53.5 39 61.5


User provided reference genes

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