Gene: AT2G38610

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38610
  • Transcript Identifier AT2G38610.2
  • Gene Type Coding gene
  • Location Chr2 : 16147552-16149638 : negative

Gene Family Information

  • ID HOM05D001024
  • #Genes/#Species 592/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38610.2
  • uniprot Q9ZVI3

Descriptions

  • Description RNA-binding KH domain-containing protein
  • Computational description RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT3G08620.1); Has 1345 Blast hits to 1344 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 813; Fungi - 157; Plants - 284; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048024
IBA
Gene Ontologyregulation of mRNA splicing, via spliceosome1
GO:0048577
ISO
PLAZA Integrative Orthologynegative regulation of short-day photoperiodism, flowering Os03g0815700
GO:0048579
ISO
PLAZA Integrative Orthologynegative regulation of long-day photoperiodism, flowering Os03g0815700

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 2 3
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding Os03g0815700

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004088 K Homology domain, type 1
IPR045071 KH domain-containing BBP-like
IPR004087 K Homology domain
IPR036612 K Homology domain, type 1 superfamily
IPR032377 STAR protein, homodimerisation region
Mapman id Description
35.1 not assigned.annotated