Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.2e-57 223.8 104 100.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.9e-56 219.9 104 98.1
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.6e-55 218.4 104 97.1
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.4e-54 213.8 104 94.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.2e-53 211.1 104 94.2
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 2.8e-49 198.4 104 87.5
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.2e-46 188.7 104 82.7
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 6.4e-46 187.2 104 83.7
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.9e-45 185.7 104 81.7
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.5e-42 175.3 106 76.4
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.0e-40 166.8 104 78.8
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 5.8e-39 164.1 103 74.8
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 5.8e-39 164.1 99 75.8
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-37 159.8 104 76.0
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.1e-37 159.8 105 74.3
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.4e-37 159.5 104 68.3
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.4e-37 158.7 104 73.1
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 5.4e-37 157.5 105 74.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 7.1e-37 157.1 104 72.1
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-36 156.4 104 69.2
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.5e-36 154.8 104 71.2
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.5e-36 154.8 105 73.3
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.6e-36 154.5 106 73.6
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 4.6e-36 154.5 104 70.2
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.0e-35 153.3 104 70.2
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.8e-35 152.5 104 70.2
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.3e-35 152.1 104 68.3
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 2.3e-35 152.1 104 65.4
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.9e-35 151.4 103 66.0
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 3.9e-35 151.4 103 66.0
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 6.7e-35 150.6 104 70.2
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.1e-34 149.8 104 69.2
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.9e-34 149.1 104 66.3
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 4.3e-34 147.9 104 67.3
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 5.6e-34 147.5 104 65.4
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.4e-34 147.1 104 70.2
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.8e-33 145.2 105 65.7
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 2.8e-33 145.2 104 67.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 3.7e-33 144.8 104 66.3
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 3.7e-33 144.8 104 66.3
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.8e-32 142.5 105 67.6
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.8e-32 142.5 104 63.5
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 6.9e-32 140.6 104 65.4
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 9.0e-32 140.2 104 63.5
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 9.0e-32 140.2 104 65.4
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.6e-31 138.7 104 68.3
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.5e-31 137.9 105 63.8
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 1.7e-30 136.0 104 58.7
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 4.9e-30 134.4 104 62.5
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.4e-29 132.9 104 59.6
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.9e-29 132.5 104 56.7
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.2e-29 131.3 109 58.7
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 7.1e-29 130.6 104 56.7
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 9.3e-29 130.2 104 62.5
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.6e-28 129.4 104 57.7
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.7e-28 128.6 104 61.5
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 3.5e-28 128.3 104 59.6
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 4.6e-28 127.9 104 60.6
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.6e-28 127.9 104 60.6
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.6e-28 127.9 104 60.6
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 4.6e-28 127.9 105 58.1
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 6.0e-28 127.5 105 60.0
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 7.9e-28 127.1 109 56.9
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.0e-27 126.7 104 59.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.0e-27 126.7 106 61.3
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.3e-27 126.3 104 55.8
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.3e-27 126.3 107 57.0
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.3e-27 126.3 104 59.6
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.3e-27 126.3 105 60.0
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.8e-27 125.9 104 57.7
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 6.7e-27 124.0 104 63.5
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 8.7e-27 123.6 105 53.3
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 5.7e-26 120.9 105 58.1
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 7.4e-26 120.6 110 54.5
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 6.2e-25 117.5 75 76.0
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.4e-24 116.3 104 56.7
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 3.1e-24 115.2 104 52.9
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 4.1e-24 114.8 105 56.2
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.9e-24 114.0 106 57.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 6.9e-24 114.0 106 57.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 6.9e-24 114.0 106 57.5
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 6.9e-24 114.0 105 51.4
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.5e-23 112.8 104 53.8
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.5e-23 112.8 104 53.8
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.6e-23 112.1 103 53.4
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.8e-23 110.9 111 50.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 7.6e-23 110.5 111 48.6
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.0e-22 110.2 104 55.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 1.7e-22 109.4 111 48.6
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.7e-22 109.4 111 48.6
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 1.7e-22 109.4 106 50.9
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 2.2e-22 109.0 111 48.6
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.9e-22 108.6 111 47.7
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 3.8e-22 108.2 111 48.6
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 6.5e-22 107.5 111 47.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-21 106.7 109 47.7
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.1e-21 106.7 111 47.7
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.4e-21 106.3 111 49.5
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.4e-21 106.3 104 51.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 3.2e-21 105.1 111 46.8
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 5.5e-21 104.4 104 49.0
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 1.2e-20 103.2 104 47.1
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.7e-20 102.1 106 51.9
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.0e-19 98.6 107 43.0
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 3.0e-19 98.6 111 45.9
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 3.9e-19 98.2 104 46.2
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 5.1e-19 97.8 104 45.2
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 5.1e-19 97.8 104 50.0
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 6.7e-19 97.4 104 51.0
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.1e-18 96.7 110 45.5
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.1e-18 96.7 105 54.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.5e-18 96.3 107 43.9
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 4.3e-18 94.7 111 42.3
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 5.7e-18 94.4 107 42.1
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 5.7e-18 94.4 110 44.5
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 9.7e-18 93.6 105 45.7
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.3e-17 93.2 104 46.2
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.6e-17 92.8 109 41.3
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 2.2e-17 92.4 104 41.3
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 2.4e-16 89.0 104 40.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.4e-16 89.0 110 39.1
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.1e-16 88.6 106 43.4
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.1e-16 88.6 105 44.8
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 5.3e-16 87.8 104 39.4
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 5.3e-16 87.8 104 39.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 5.3e-16 87.8 104 39.4
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 5.3e-16 87.8 104 45.2
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 4.5e-15 84.7 104 43.3
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 7.7e-15 84.0 98 41.8
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.0e-14 83.6 117 43.6
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.3e-14 83.2 110 40.0
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.2e-14 82.4 108 40.7
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.9e-14 82.0 104 43.3
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 8.5e-14 80.5 111 38.7
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 8.5e-14 80.5 104 39.4
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 1.4e-13 79.7 105 37.1
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.4e-13 79.7 104 46.2
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 4.2e-13 78.2 108 45.4
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 2.7e-12 75.5 106 41.5
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 2.3e-11 72.4 104 37.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 3.9e-11 71.6 104 38.5
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 7.4e-10 67.4 95 37.9
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 9.7e-10 67.0 112 33.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.7e-09 66.2 95 38.9
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 2.8e-09 65.5 104 38.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.4e-08 62.4 89 38.2
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 3.1e-08 62.0 103 30.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 5.3e-08 61.2 89 39.3
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.2e-07 60.1 119 34.5
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.0e-07 59.3 110 33.6
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 6.5e-06 54.3 104 30.8


User provided reference genes

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