Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.5e-273 945.7 493 100.0
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 5.4e-236 820.8 427 97.7
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.5e-198 696.4 506 75.7
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.0e-194 683.7 503 75.5
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-191 673.3 507 74.8
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.1e-183 645.6 512 71.1
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.4e-175 619.4 503 68.2
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.1e-175 619.0 502 70.9
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 9.1e-175 617.5 492 68.9
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-172 610.5 502 70.3
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 4.7e-171 605.1 510 67.3
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.4e-170 603.6 505 68.3
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 6.8e-170 601.3 501 67.3
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 8.8e-170 600.9 434 74.9
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 5.7e-169 598.2 513 66.9
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.4e-167 592.8 473 69.1
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.1e-167 592.4 467 70.7
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.2e-166 590.5 508 65.9
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.2e-166 590.5 505 66.7
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.2e-166 590.5 493 66.7
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 2.0e-166 589.7 473 69.6
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.1e-164 583.9 466 69.5
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.2e-163 580.5 475 67.6
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.6e-163 580.1 466 69.3
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.6e-163 578.9 475 67.4
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.6e-163 578.9 497 65.4
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.7e-163 578.6 500 65.0
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.0e-162 577.4 476 68.1
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.0e-162 575.9 509 65.0
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.2e-161 573.9 513 63.7
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.5e-161 573.5 500 66.0
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 2.0e-161 573.2 496 67.1
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 2.6e-161 572.8 511 64.2
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 4.4e-161 572.0 479 67.8
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 5.7e-161 571.6 502 65.3
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 9.8e-161 570.9 471 68.2
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.7e-160 570.1 498 64.9
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 6.3e-160 568.2 507 63.7
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 5.4e-159 565.1 479 67.2
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.7e-158 562.8 509 65.8
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 3.5e-158 562.4 489 65.0
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 4.5e-158 562.0 476 66.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 5.9e-158 561.6 487 64.5
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.0e-157 560.8 498 64.1
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.9e-157 559.3 498 65.9
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 6.6e-157 558.1 497 63.6
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 2.5e-156 556.2 468 65.8
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 5.6e-156 555.1 498 64.1
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 9.5e-156 554.3 491 64.6
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.1e-155 553.1 486 64.8
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.8e-154 550.1 514 62.5
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.3e-154 549.7 448 67.9
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.3e-154 549.7 495 63.6
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 6.8e-154 548.1 498 62.0
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.2e-153 547.4 497 63.2
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.5e-153 547.0 481 63.4
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 2.0e-153 546.6 478 63.2
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.6e-153 546.2 472 67.6
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.4e-153 545.8 463 63.9
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-152 543.9 413 72.4
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.3e-152 543.9 471 66.5
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.7e-152 543.5 478 61.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.2e-152 543.1 475 64.0
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.2e-152 543.1 489 63.6
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 2.2e-152 543.1 492 64.2
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.9e-152 542.7 478 63.8
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.4e-151 540.4 480 63.8
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.9e-151 540.0 469 62.5
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.6e-150 537.0 490 62.4
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 2.7e-150 536.2 463 61.3
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.3e-149 533.9 462 61.0
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.3e-149 533.9 497 62.0
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 1.7e-149 533.5 485 62.3
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.3e-149 533.1 460 63.7
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 3.0e-149 532.7 464 62.3
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 5.0e-149 531.9 487 61.6
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 5.0e-149 531.9 466 61.4
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 6.6e-149 531.6 429 67.1
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.5e-148 529.6 485 63.9
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 4.7e-147 525.4 492 60.4
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 6.2e-147 525.0 493 62.7
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 1.1e-146 524.2 483 62.9
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 6.8e-146 521.5 419 68.5
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 8.9e-146 521.2 472 63.1
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.3e-144 517.3 475 62.7
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.9e-144 516.2 509 59.3
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 6.4e-144 515.0 500 59.0
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.9e-143 513.5 479 59.9
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 2.4e-143 513.1 478 64.0
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.1e-143 512.3 499 59.1
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 4.1e-143 512.3 479 59.3
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.6e-142 510.4 469 60.1
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 2.1e-142 510.0 487 60.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 4.6e-142 508.8 387 70.8
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.3e-141 506.5 471 62.2
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.5e-140 503.1 495 60.0
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.3e-140 502.7 486 59.1
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 4.3e-140 502.3 484 59.9
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 4.3e-140 502.3 484 59.7
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.3e-140 502.3 505 55.4
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.8e-139 499.6 487 61.0
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 8.1e-139 498.0 480 59.4
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.0e-138 495.7 384 67.4
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.4e-137 492.7 486 57.8
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.3e-136 490.7 474 58.4
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.3e-136 490.7 487 60.2
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 8.3e-136 488.0 470 58.1
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.1e-135 487.6 479 60.1
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 2.4e-135 486.5 476 57.8
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 5.4e-135 485.3 480 58.1
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.6e-134 483.8 497 59.4
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.7e-134 483.0 473 58.6
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 6.0e-134 481.9 475 57.1
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.0e-133 481.1 473 58.4
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 3.0e-133 479.6 475 58.1
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 5.1e-133 478.8 474 58.0
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.1e-133 478.8 481 56.8
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.1e-132 477.6 462 58.7
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.5e-132 476.5 483 56.1
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 2.5e-132 476.5 447 60.4
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 3.3e-132 476.1 474 57.6
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.1e-131 473.4 475 56.8
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 8.1e-131 471.5 451 58.5
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-130 471.1 468 57.9
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-130 470.7 473 57.1
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.8e-130 470.3 473 57.1
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.8e-130 470.3 473 56.4
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.2e-130 468.8 479 55.1
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 8.9e-130 468.0 482 55.4
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.5e-129 467.2 474 57.0
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.0e-129 466.8 467 56.5
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-129 466.1 474 56.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.9e-128 463.0 481 55.1
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.1e-127 461.1 317 74.4
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 1.6e-126 457.2 474 55.3
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.6e-126 457.2 439 58.3
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 5.1e-125 452.2 472 55.1
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.8e-123 446.4 475 54.9
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 8.1e-123 444.9 495 53.1
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 3.1e-122 443.0 472 54.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 9.9e-121 438.0 503 53.1
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.7e-120 437.2 490 53.9
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.3e-117 426.8 427 58.1
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.3e-112 411.0 495 50.1
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 5.4e-111 405.6 383 56.9
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.8e-109 400.6 278 70.9
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 7.9e-102 375.2 463 51.8
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 7.4e-100 368.6 377 51.2
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 2.2e-91 340.5 483 42.4
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-88 331.6 469 48.0
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.2e-87 326.6 359 51.5
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 9.1e-74 282.0 192 78.6
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.1e-66 258.5 356 43.5
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 2.4e-58 230.7 361 39.9
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 2.2e-56 224.2 195 66.2
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.6e-46 190.3 137 77.4
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.4e-45 188.3 266 44.4
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 4.4e-44 183.3 324 40.4
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.8e-43 180.6 147 64.6
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.8e-42 177.9 129 76.7
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 6.6e-40 169.5 129 72.1
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.1e-39 168.7 145 67.6
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.8e-38 164.1 117 65.0
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 4.4e-36 156.8 343 36.7
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.5e-31 141.7 99 67.7
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 2.7e-25 120.9 316 32.9
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.9e-24 117.1 151 44.4
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.9e-24 117.1 151 44.4
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.5e-23 114.4 99 59.6
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 2.4e-18 97.8 336 26.8
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.7e-17 94.4 306 30.1
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 1.7e-16 91.7 70 54.3
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 9.9e-12 75.9 61 57.4
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.2e-09 68.9 109 47.7
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 1.2e-09 68.9 53 67.9
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 1.6e-06 58.5 147 38.1


User provided reference genes

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