Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002113 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 1.6e-208 729.2 372 100.0
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 8.2e-152 540.8 368 76.1
vmacro10455 Vaccinium macrocarpon HOM05D003438 ORTHO05D004235 6.1e-147 524.6 368 75.0
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.4e-138 496.9 378 69.8
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.1e-135 485.3 367 68.4
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 4.1e-135 485.3 367 68.4
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 4.1e-135 485.3 368 71.7
GSVIVG01010139001 Vitis vinifera HOM05D003438 ORTHO05D004235 4.1e-135 485.3 368 68.5
Rhsim13G0143500 Rhododendron simsii HOM05D003438 ORTHO05D004235 1.3e-133 480.3 368 69.8
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 7.5e-129 464.5 368 63.6
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 3.1e-127 459.1 368 63.9
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 2.7e-126 456.1 368 63.0
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 2.9e-125 452.6 370 64.6
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 3.8e-125 452.2 368 64.7
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 1.1e-124 450.7 368 63.3
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 1.2e-123 447.2 368 62.8
Oeu027415.2 Olea europaea HOM05D003438 ORTHO05D004235 1.6e-123 446.8 368 62.8
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 4.7e-123 445.3 368 62.5
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 6.3e-120 434.9 367 62.1
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 8.3e-120 434.5 372 63.2
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 8.3e-120 434.5 368 60.3
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 8.3e-120 434.5 368 62.0
Gohir.A03G107400 Gossypium hirsutum HOM05D003438 ORTHO05D004235 1.8e-119 433.3 368 60.6
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 2.4e-119 433.0 375 59.7
QL03p047145 Quercus lobata HOM05D003438 ORTHO05D004235 3.1e-119 432.6 367 62.9
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 4.1e-119 432.2 367 61.9
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 7.0e-119 431.4 368 61.7
Gohir.D02G132466 Gossypium hirsutum HOM05D003438 ORTHO05D004235 7.0e-119 431.4 368 59.8
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 7.0e-119 431.4 368 62.2
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 1.2e-118 430.6 367 59.9
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 7.7e-118 427.9 368 60.9
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 2.9e-117 426.0 367 59.7
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 3.8e-117 425.6 368 59.0
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 5.0e-117 425.2 371 62.3
RcHm_v2.0_Chr4g0436941 Rosa chinensis HOM05D003438 ORTHO05D004235 4.2e-116 422.2 368 60.3
Peaxi162Scf00396g01321 Petunia axillaris HOM05D003438 ORTHO05D004235 5.5e-116 421.8 367 59.7
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 7.2e-116 421.4 368 61.4
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 1.6e-115 420.2 367 58.6
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 2.1e-115 419.9 337 64.1
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 2.8e-115 419.5 376 59.0
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 6.1e-115 418.3 381 59.8
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 1.4e-114 417.2 376 58.8
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 4.0e-114 415.6 381 59.3
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 5.2e-114 415.2 367 59.7
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 6.8e-114 414.8 375 59.7
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 6.8e-114 414.8 367 59.1
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 2.6e-113 412.9 367 59.9
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 2.6e-113 412.9 367 59.7
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 3.4e-113 412.5 368 59.8
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 3.4e-113 412.5 367 59.7
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 3.4e-113 412.5 367 59.4
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 5.7e-113 411.8 381 59.3
Solyc04g005190.2 Solanum lycopersicum HOM05D003438 ORTHO05D004235 5.7e-113 411.8 367 59.1
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 7.5e-113 411.4 367 59.7
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 7.5e-113 411.4 369 58.3
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 1.7e-112 410.2 371 60.4
Cc11_g11330 Coffea canephora HOM05D003438 ORTHO05D004235 2.8e-112 409.5 367 58.0
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 6.3e-112 408.3 368 55.7
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 8.3e-112 407.9 370 58.6
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 1.8e-111 406.8 369 58.3
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 1.8e-111 406.8 368 61.1
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 2.4e-111 406.4 367 58.0
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 2.4e-111 406.4 367 58.6
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 4.1e-111 405.6 370 58.1
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 7.0e-111 404.8 367 58.9
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 7.8e-110 401.4 368 55.7
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 2.3e-109 399.8 367 57.8
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 2.5e-108 396.4 368 55.7
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 8.0e-107 391.3 369 58.0
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 1.8e-106 390.2 368 55.2
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 1.2e-105 387.5 368 56.5
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 2.0e-105 386.7 369 55.6
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 2.0e-105 386.7 368 53.8
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 5.4e-103 378.6 367 53.7
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 5.4e-103 378.6 367 53.7
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 3.5e-102 375.9 375 50.7
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 8.6e-101 371.3 367 52.9
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 2.5e-100 369.8 367 54.0
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 2.5e-100 369.8 368 54.1
Carub.0002s1552 Capsella rubella HOM05D003438 ORTHO05D004235 3.3e-100 369.4 367 54.0
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 5.6e-100 368.6 368 53.8
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 1.6e-99 367.1 375 52.0
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 2.8e-99 366.3 368 54.6
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 3.6e-99 365.9 367 52.3
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 4.7e-99 365.5 367 52.6
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 1.8e-98 363.6 368 53.3
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 2.3e-98 363.2 385 53.5
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 1.5e-92 344.0 370 51.1
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 5.6e-92 342.0 367 51.8
CDE02G1987 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 1.7e-88 330.5 375 49.9
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 2.9e-88 329.7 368 49.7
Psat4g082840 Pisum sativum HOM05D003438 ORTHO05D004235 6.4e-88 328.6 275 63.6
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 2.3e-85 320.1 375 46.4
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 9.5e-84 314.7 326 56.1
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 8.4e-80 301.6 252 61.9
Psat2g052880 Pisum sativum HOM05D003438 ORTHO05D004235 4.3e-76 289.3 251 62.2
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 2.1e-70 270.4 368 42.7
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 7.8e-70 268.5 377 40.6
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 2.8e-67 260.0 369 42.5
Psat7g028040 Pisum sativum HOM05D003438 ORTHO05D004235 1.8e-66 257.3 223 61.9
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 4.0e-58 229.6 348 41.7
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 2.6e-57 226.9 320 41.2
CBR_g48055 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-52 209.1 420 33.3
FAN22G1421 Fragaria x ananassa HOM05D003438 ORTHO05D012326 9.6e-52 208.4 172 65.1
Ca_22509_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 1.9e-47 194.1 252 48.4
Zm00001eb245370 Zea mays HOM05D003438 ORTHO05D004235 9.3e-39 165.2 193 47.2
MD13G1054300 Malus domestica HOM05D003438 ORTHO05D004235 5.5e-31 139.4 158 48.7
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 4.8e-27 126.3 359 28.1
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 6.1e-22 109.4 271 32.8
VMungo1080G0040 Vigna mungo HOM05D003438 ORTHO05D000002 1.4e-21 108.2 116 50.9
Psat2g033000 Pisum sativum HOM05D003438 ORTHO05D004235 8.2e-19 99.0 62 71.0
Psat0s4200g0080 Pisum sativum HOM05D002807 ORTHO05D004235 1.8e-18 97.8 62 72.6
Actinidia07743 Actinidia chinensis HOM05D003438 ORTHO05D004235 1.9e-15 87.8 91 54.9
Actinidia30182 Actinidia chinensis HOM05D003438 ORTHO05D004235 1.9e-15 87.8 48 85.4
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 9.4e-15 85.5 257 28.4
Ca_22508_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 1.2e-14 85.1 49 77.6
Glyma.01G000100 Glycine max HOM05D003438 ORTHO05D004235 2.0e-12 77.8 111 42.3
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 2.4e-10 70.9 43 72.1
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 2.4e-10 70.9 43 72.1
Psat7g103520 Pisum sativum HOM05D003438 ORTHO05D014892 2.4e-10 70.9 43 72.1
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.2e-09 68.6 296 27.7
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.6e-09 68.2 296 28.4
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 3.5e-09 67.0 296 28.0
MBI04_g26975_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D014892 7.7e-09 65.9 46 65.2
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 3.8e-08 63.5 298 27.5
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 3.8e-08 63.5 298 27.5
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 3.8e-08 63.5 296 27.7
Actinidia07752 Actinidia chinensis HOM05D003438 ORTHO05D004235 8.5e-08 62.4 41 70.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 8.5e-08 62.4 297 26.9
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 1.5e-07 61.6 329 25.5
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.9e-07 61.2 336 26.5
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.9e-07 61.2 330 26.7
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 4.2e-07 60.1 295 27.5
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 5.5e-07 59.7 308 26.3
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 9.4e-07 58.9 267 27.0
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.2e-06 58.5 298 25.5
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.2e-06 58.5 303 27.7
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 1.6e-06 58.2 256 23.0
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 2.1e-06 57.8 240 26.7
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 2.7e-06 57.4 316 25.0
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 2.7e-06 57.4 319 25.4
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.7e-06 57.4 319 25.4
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 2.7e-06 57.4 319 26.3
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.7e-06 57.4 226 27.4
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 3.6e-06 57.0 300 26.3
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 3.6e-06 57.0 320 26.2
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 4.7e-06 56.6 316 26.9
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 4.7e-06 56.6 319 24.1
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.1e-06 56.2 321 25.2
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 6.1e-06 56.2 296 25.7
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 6.1e-06 56.2 194 28.4
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 8.0e-06 55.8 321 24.9
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 8.0e-06 55.8 303 23.8
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 8.0e-06 55.8 319 25.4


User provided reference genes

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