Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 2.7e-49 198.4 99 100.0
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 3.9e-16 88.2 45 91.1
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 6.6e-16 87.4 50 78.0
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 8.6e-16 87.0 61 67.2
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.1e-15 86.7 60 66.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.5e-15 86.3 62 66.1
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 1.9e-15 85.9 61 67.2
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 1.9e-15 85.9 50 78.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 2.5e-15 85.5 45 82.2
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.6e-15 84.3 45 82.2
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.6e-15 84.3 45 82.2
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 9.5e-15 83.6 45 82.2
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 9.5e-15 83.6 50 76.0
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 1.2e-14 83.2 50 78.0
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.6e-14 82.8 45 82.2
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 2.1e-14 82.4 50 74.0
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 3.6e-14 81.6 45 80.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 6.2e-14 80.9 51 74.5
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.8e-13 79.3 51 76.5
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 2.3e-13 79.0 50 74.0
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.3e-13 79.0 50 74.0
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 8.9e-13 77.0 51 70.6
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 8.9e-13 77.0 51 70.6
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 8.9e-13 77.0 67 59.7
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.2e-12 76.6 51 70.6
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 2.0e-12 75.9 51 68.6
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 2.0e-12 75.9 51 70.6
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 2.6e-12 75.5 50 64.0
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 2.6e-12 75.5 50 68.0
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 3.4e-12 75.1 51 70.6
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 3.4e-12 75.1 45 71.1
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 3.4e-12 75.1 51 72.5
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.4e-12 75.1 51 72.5
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 4.4e-12 74.7 51 68.6
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.8e-12 74.3 51 66.7
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 5.8e-12 74.3 46 73.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.8e-12 74.3 94 47.9
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 7.5e-12 73.9 51 68.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 1.3e-11 73.2 46 71.7
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 1.3e-11 73.2 51 66.7
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.3e-11 73.2 51 66.7
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.7e-11 72.8 51 68.6
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 2.2e-11 72.4 51 70.6
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 2.2e-11 72.4 51 68.6
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.9e-11 72.0 51 70.6
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 2.9e-11 72.0 47 72.3
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 4.9e-11 71.2 63 55.6
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 6.4e-11 70.9 51 68.6
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.4e-11 70.9 51 68.6
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 8.3e-11 70.5 51 66.7
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 8.3e-11 70.5 51 66.7
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 1.1e-10 70.1 46 65.2
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 1.1e-10 70.1 51 66.7
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.4e-10 69.7 51 68.6
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.4e-10 69.7 51 66.7
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 1.9e-10 69.3 52 69.2
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.9e-10 69.3 67 52.2
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.9e-10 69.3 45 62.2
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.4e-10 68.9 47 72.3
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 3.2e-10 68.6 51 66.7
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.1e-10 68.2 51 66.7
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 5.4e-10 67.8 47 66.0
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 7.1e-10 67.4 51 64.7
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 7.1e-10 67.4 47 72.3
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 9.2e-10 67.0 51 60.8
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 9.2e-10 67.0 52 67.3
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.2e-09 66.6 68 52.9
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.2e-09 66.6 66 51.5
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 1.2e-09 66.6 47 70.2
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.6e-09 66.2 51 58.8
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-09 65.9 60 56.7
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 2.1e-09 65.9 60 56.7
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.1e-09 65.9 60 56.7
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 2.1e-09 65.9 43 72.1
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 3.5e-09 65.1 68 51.5
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 3.5e-09 65.1 46 60.9
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 6.0e-09 64.3 57 56.1
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 6.0e-09 64.3 38 73.7
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 6.0e-09 64.3 38 73.7
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 6.0e-09 64.3 38 73.7
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 6.0e-09 64.3 51 66.7
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 7.8e-09 63.9 68 52.9
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 7.8e-09 63.9 45 66.7
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.0e-08 63.5 57 50.9
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.0e-08 63.5 52 59.6
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.0e-08 63.5 47 61.7
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.3e-08 63.2 67 47.8
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.7e-08 62.8 52 59.6
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.7e-08 62.8 52 61.5
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.7e-08 62.8 52 59.6
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 2.3e-08 62.4 52 59.6
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.0e-08 62.0 52 57.7
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 3.0e-08 62.0 52 63.5
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.9e-08 61.6 52 59.6
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 6.6e-08 60.8 50 52.0
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 8.6e-08 60.5 45 57.8
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 8.6e-08 60.5 52 57.7
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 8.6e-08 60.5 58 53.4
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 1.1e-07 60.1 47 59.6
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.1e-07 60.1 73 42.5
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.1e-07 60.1 73 42.5
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.5e-07 59.7 52 57.7
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.5e-07 59.7 52 57.7
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.5e-07 59.7 52 57.7
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.5e-07 59.7 52 57.7
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 1.5e-07 59.7 46 65.2
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.5e-07 59.7 51 58.8
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 1.9e-07 59.3 47 59.6
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 3.3e-07 58.5 42 64.3
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 4.3e-07 58.2 47 59.6
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 5.6e-07 57.8 47 59.6
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 7.3e-07 57.4 52 55.8
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 9.5e-07 57.0 52 53.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.6e-06 56.2 52 53.8
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 2.1e-06 55.8 45 48.9
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 8.1e-06 53.9 50 48.0


User provided reference genes

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