Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001589 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D028375 1.9e-80 302.4 146 100.0
CSS0018665 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D028375 4.4e-77 291.2 145 95.9
CSS0015436 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 1.1e-62 243.4 135 88.9
CSS0030645 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D002182 4.0e-54 214.9 123 87.8
CSS0002676 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D028375 4.0e-46 188.3 102 93.1
Actinidia30138 Actinidia chinensis HOM05D000001 ORTHO05D002182 3.7e-31 138.7 150 56.7
Actinidia09526 Actinidia chinensis HOM05D000001 ORTHO05D002182 4.2e-27 125.2 133 56.4
Rhsim01G0261400 Rhododendron simsii HOM05D000001 ORTHO05D002182 7.9e-26 120.9 143 53.1
Rhsim13G0038900 Rhododendron simsii HOM05D000001 ORTHO05D002182 1.1e-24 117.1 132 52.3
vmacro14807 Vaccinium macrocarpon HOM05D000001 ORTHO05D002182 1.1e-22 110.5 131 51.1
Dinv16381 Davidia involucrata HOM05D000001 ORTHO05D002182 1.3e-20 103.6 133 48.1
Lj1A72T50 Lonicera japonica HOM05D000001 ORTHO05D002182 3.6e-18 95.5 132 44.7
Haze_24678 Corylus avellana HOM05D000001 ORTHO05D002182 6.3e-15 84.7 134 37.3
Lj1C72G5 Lonicera japonica HOM05D000001 ORTHO05D002182 1.4e-14 83.6 134 41.0
Cfa002466 Carpinus fangiana HOM05D000001 ORTHO05D002182 3.1e-14 82.4 127 37.8
Lj2A1144G94 Lonicera japonica HOM05D000001 ORTHO05D002182 7.0e-14 81.3 124 43.5
Thecc.01G253100 Theobroma cacao HOM05D000001 ORTHO05D002182 4.2e-11 72.0 122 40.2
Atru.chr5.1792 Acer truncatum HOM05D000001 ORTHO05D002182 1.2e-10 70.5 141 37.6
Atru.chr5.1799 Acer truncatum HOM05D000001 ORTHO05D002182 1.2e-10 70.5 141 37.6
QL09p040907 Quercus lobata HOM05D000001 ORTHO05D002182 3.6e-10 68.9 130 32.3
Duzib138G0763 Durio zibethinus HOM05D000001 ORTHO05D002182 4.7e-10 68.6 128 35.9
Oeu064635.2 Olea europaea HOM05D000001 ORTHO05D002182 1.0e-09 67.4 104 41.3
COL.COLO4_08954 Corchorus olitorius HOM05D000001 ORTHO05D002182 5.2e-09 65.1 141 34.8
SGA_v2.0_scaffold138G35197 Striga asiatica HOM05D000001 ORTHO05D002182 6.7e-09 64.7 121 35.5
Nitab4.5_0006980g0010 Nicotiana tabacum HOM05D000001 ORTHO05D002182 2.0e-08 63.2 130 33.8
PGSC0003DMG400014714 Solanum tuberosum HOM05D000001 ORTHO05D002182 2.6e-08 62.8 107 38.3
CiPaw.03G268500 Carya illinoinensis HOM05D000001 ORTHO05D002182 4.4e-08 62.0 144 32.6
Nitab4.5_0000326g0240 Nicotiana tabacum HOM05D000001 ORTHO05D002182 4.4e-08 62.0 128 33.6
TAR362G1208 Trochodendron aralioides HOM05D000001 ORTHO05D002182 4.4e-08 62.0 136 37.5
Solyc06g008210.4 Solanum lycopersicum HOM05D000001 ORTHO05D002182 7.5e-08 61.2 142 35.9
Gohir.A07G205000 Gossypium hirsutum HOM05D000001 ORTHO05D002182 2.2e-07 59.7 130 33.1
Gohir.D07G211000 Gossypium hirsutum HOM05D000001 ORTHO05D002182 2.2e-07 59.7 130 33.8
Sopen06g003070 Solanum pennellii HOM05D000001 ORTHO05D002182 6.3e-07 58.2 142 34.5
Peaxi162Scf01157g00215 Petunia axillaris HOM05D000001 ORTHO05D002182 8.2e-07 57.8 135 33.3
Gorai.001G238400 Gossypium raimondii HOM05D000001 ORTHO05D002182 1.1e-06 57.4 130 33.1
Glyma.19G166900 Glycine max HOM05D000001 ORTHO05D002182 1.8e-06 56.6 55 49.1
Glyma.03G165600 Glycine max HOM05D000001 ORTHO05D002182 2.4e-06 56.2 57 49.1
Ciclev10019112m.g Citrus clementina HOM05D000001 ORTHO05D002182 3.1e-06 55.8 131 35.1
Manes.12G035400 Manihot esculenta HOM05D000001 ORTHO05D002182 5.3e-06 55.1 148 33.8
Sed0014923 Sechium edule HOM05D000001 ORTHO05D002182 5.3e-06 55.1 127 34.6
MSTRG.21471 Avicennia marina HOM05D000001 ORTHO05D002182 7.0e-06 54.7 144 31.9
ClCG07G001270 Citrullus lanatus HOM05D000001 ORTHO05D002182 7.0e-06 54.7 131 32.8


User provided reference genes

Program Settings