Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001527 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 3.9e-128 461.5 230 100.0
CSS0030096 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 2.4e-125 452.2 230 98.3
CSS0017980 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 3.2e-74 282.3 152 93.4
CSS0043109 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 3.0e-72 275.8 152 92.1
vmacro18913 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 1.5e-55 220.3 229 55.9
Rhsim08G0221300 Rhododendron simsii HOM05D001537 ORTHO05D002595 7.5e-55 218.0 229 55.9
Actinidia08978 Actinidia chinensis HOM05D001537 ORTHO05D002595 1.1e-53 214.2 233 56.2
Dinv30509 Davidia involucrata HOM05D001537 ORTHO05D002595 7.8e-44 181.4 236 50.8
TAR636G3516 Trochodendron aralioides HOM05D001537 ORTHO05D002595 1.1e-24 117.9 249 36.9
Atru.chr1.3271 Acer truncatum HOM05D001537 ORTHO05D002595 1.8e-24 117.1 239 36.8
GSVIVG01017107001 Vitis vinifera HOM05D001537 ORTHO05D013980 3.4e-23 112.8 281 32.0
Potri.001G180200 Populus trichocarpa HOM05D001537 ORTHO05D002595 2.9e-22 109.8 235 35.3
Lj5A60G62 Lonicera japonica HOM05D001537 ORTHO05D013980 3.8e-22 109.4 235 34.9
Haze_16429 Corylus avellana HOM05D001537 ORTHO05D002595 1.9e-21 107.1 241 37.3
TWI12G1035 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 4.2e-21 105.9 237 35.4
CAN.G438.67 Capsicum annuum HOM05D001537 ORTHO05D002595 3.5e-20 102.8 222 36.0
Cfa002066 Carpinus fangiana HOM05D001537 ORTHO05D002595 2.3e-19 100.1 237 36.7
Hma1.2p1_0092F.1_g046630 Hydrangea macrophylla HOM05D001537 ORTHO05D013980 2.5e-18 96.7 149 45.6
QL05p024197 Quercus lobata HOM05D001537 ORTHO05D002595 3.3e-18 96.3 190 39.5
MD17G1195000 Malus domestica HOM05D001537 ORTHO05D002595 4.3e-18 95.9 232 33.6
Prupe.3G071000 Prunus persica HOM05D001537 ORTHO05D002595 4.8e-17 92.4 236 32.2
Manes.11G047500 Manihot esculenta HOM05D001537 ORTHO05D002595 1.1e-16 91.3 235 34.5
CiPaw.01G239300 Carya illinoinensis HOM05D001537 ORTHO05D002595 4.0e-16 89.4 238 35.3
Ciclev10024801m.g Citrus clementina HOM05D001537 ORTHO05D002595 4.0e-16 89.4 204 39.2
Nitab4.5_0000671g0080 Nicotiana tabacum HOM05D001537 ORTHO05D002595 5.3e-16 89.0 227 32.6
RcHm_v2.0_Chr2g0137871 Rosa chinensis HOM05D001537 ORTHO05D002595 9.0e-16 88.2 241 32.8
Solyc03g120200.2 Solanum lycopersicum HOM05D001537 ORTHO05D002595 2.6e-15 86.7 221 30.8
Sopen03g039070 Solanum pennellii HOM05D001537 ORTHO05D002595 1.3e-14 84.3 221 30.8
Duzib235G1517 Durio zibethinus HOM05D001537 ORTHO05D002595 6.4e-14 82.0 234 33.3
MSTRG.11077 Avicennia marina HOM05D001537 ORTHO05D002595 1.4e-13 80.9 225 31.6
Nn8g39217 Nelumbo nucifera HOM05D001537 ORTHO05D002595 4.2e-13 79.3 236 33.5
COL.COLO4_30371 Corchorus olitorius HOM05D001537 ORTHO05D002595 9.3e-13 78.2 233 33.0
Cc04_g03430 Coffea canephora HOM05D001537 ORTHO05D002595 1.2e-12 77.8 226 31.9
TPR.G37206 Trifolium pratense HOM05D001537 ORTHO05D002595 1.2e-12 77.8 231 29.0
Psat5g298960 Pisum sativum HOM05D001537 ORTHO05D002595 2.7e-12 76.6 231 29.4
Ca_01115_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 1.3e-11 74.3 231 31.6
Sed0016827 Sechium edule HOM05D001537 ORTHO05D002595 2.3e-11 73.6 241 29.5
Thecc.06G087400 Theobroma cacao HOM05D001537 ORTHO05D002595 2.3e-11 73.6 234 32.5
Eucgr.F03013 Eucalyptus grandis HOM05D001537 ORTHO05D002595 8.7e-11 71.6 215 31.6
Medtr2g102150 Medicago truncatula HOM05D001537 ORTHO05D002595 1.1e-10 71.2 231 27.3
QL05p023971 Quercus lobata HOM05D000071 ORTHO05D000029 7.4e-10 68.6 237 28.7
FAN14G4499 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.3e-09 67.8 251 29.5
arahy.Tifrunner.gnm1.ann1.I8FNU5 Arachis hypogaea HOM05D001537 ORTHO05D002595 2.1e-09 67.0 225 29.3
arahy.Tifrunner.gnm1.ann1.YVS4XZ Arachis hypogaea HOM05D001537 ORTHO05D002595 2.1e-09 67.0 225 29.3
Migut.I00865 Erythranthe guttata HOM05D001537 ORTHO05D002595 2.1e-09 67.0 217 30.0
FvH4_6g31180 Fragaria vesca HOM05D001537 ORTHO05D002595 4.8e-09 65.9 251 29.1
Sc21g0005110 Simmondsia chinensis HOM05D001537 ORTHO05D002595 8.1e-09 65.1 231 29.4
Lalb_Chr22g0351281 Lupinus albus HOM05D001537 ORTHO05D002595 4.0e-08 62.8 130 34.6
TPR.G37208 Trifolium pratense HOM05D001537 ORTHO05D002595 4.0e-08 62.8 232 27.6
VMungo1080G0222 Vigna mungo HOM05D001537 ORTHO05D002595 4.0e-08 62.8 220 27.7
FAN05G3427 Fragaria x ananassa HOM05D001537 ORTHO05D002595 6.9e-08 62.0 251 27.5
PGR102G0923 Punica granatum HOM05D001537 ORTHO05D002595 6.9e-08 62.0 219 29.2
ClCG09G002140 Citrullus lanatus HOM05D001537 ORTHO05D002595 9.0e-08 61.6 221 27.6
DCAR_016222 Daucus carota HOM05D001537 ORTHO05D002595 9.0e-08 61.6 224 28.1
Phvul.005G171300 Phaseolus vulgaris HOM05D001537 ORTHO05D002595 2.6e-07 60.1 230 27.8
QL05p024080 Quercus lobata HOM05D001537 ORTHO05D013980 6.4e-06 55.5 164 31.7


User provided reference genes

Program Settings