Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 7.7e-65 250.4 129 100.0
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 7.7e-65 250.4 129 100.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.7e-59 232.6 129 91.5
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.1e-58 229.9 129 90.7
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.8e-58 229.2 129 90.7
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 2.4e-58 228.8 131 91.6
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 4.1e-58 228.0 129 88.4
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 4.1e-58 228.0 129 88.4
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 5.3e-58 227.6 129 90.7
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 1.5e-57 226.1 129 87.6
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.0e-57 225.7 129 89.1
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 2.6e-57 225.3 129 86.8
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.5e-57 224.6 126 88.9
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 4.5e-57 224.6 126 88.9
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 4.5e-57 224.6 126 88.9
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 5.9e-57 224.2 129 91.5
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 5.9e-57 224.2 129 89.1
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 7.7e-57 223.8 125 89.6
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 7.7e-57 223.8 129 86.8
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.9e-56 221.9 130 87.7
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.9e-55 219.2 128 87.5
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 2.5e-55 218.8 129 89.1
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.5e-55 218.8 131 84.7
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.5e-55 218.8 126 87.3
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.5e-55 218.8 129 82.9
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.2e-54 216.5 133 87.2
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.6e-54 214.9 129 84.5
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 4.7e-54 214.5 129 83.7
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.9e-54 213.8 129 83.7
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 7.9e-54 213.8 129 82.9
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 1.4e-53 213.0 147 76.2
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 3.9e-53 211.5 129 82.2
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 3.9e-53 211.5 136 79.4
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 5.2e-53 211.1 129 82.2
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.8e-53 210.3 129 81.4
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.3e-52 208.4 129 80.6
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 5.7e-52 207.6 130 81.5
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.3e-51 206.5 129 82.2
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 2.2e-51 205.7 124 81.5
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 2.2e-51 205.7 130 82.3
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 2.8e-51 205.3 125 85.6
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 3.7e-51 204.9 129 79.8
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 4.8e-51 204.5 130 80.8
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 8.2e-51 203.8 130 81.5
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 1.1e-50 203.4 130 81.5
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.4e-50 203.0 130 80.8
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.4e-50 203.0 130 80.8
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 2.4e-50 202.2 124 79.8
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 3.1e-50 201.8 124 80.6
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 5.3e-50 201.1 130 78.5
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 9.1e-50 200.3 126 80.2
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.2e-49 199.9 124 79.0
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.6e-49 199.5 129 80.6
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 2.0e-49 199.1 124 79.8
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 3.5e-49 198.4 126 76.2
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.9e-49 197.6 129 79.8
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 5.9e-49 197.6 131 77.1
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.3e-48 196.4 140 74.3
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.7e-48 196.1 127 77.2
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 1.7e-48 196.1 127 77.2
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.2e-48 195.7 131 76.3
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 2.9e-48 195.3 127 76.4
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 3.8e-48 194.9 124 77.4
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 6.5e-48 194.1 127 75.6
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 6.5e-48 194.1 124 77.4
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.1e-47 193.4 127 74.8
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.5e-47 193.0 127 76.4
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 3.2e-47 191.8 127 74.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 3.2e-47 191.8 124 76.6
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 4.2e-47 191.4 131 75.6
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 9.4e-47 190.3 167 64.1
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 1.2e-46 189.9 122 77.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.2e-46 189.9 129 78.3
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 2.7e-46 188.7 127 72.4
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 4.7e-46 188.0 123 74.8
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 6.1e-46 187.6 132 73.5
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.0e-46 187.2 127 72.4
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 8.0e-46 187.2 126 75.4
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 1.0e-45 186.8 126 76.2
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.0e-45 186.8 126 76.2
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.4e-45 186.4 126 74.6
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 3.0e-45 185.3 128 74.2
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 4.0e-45 184.9 124 72.6
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 130 72.3
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 130 72.3
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.2e-45 184.5 121 74.4
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 5.2e-45 184.5 126 73.0
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 132 70.5
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 132 70.5
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.2e-44 183.3 122 75.4
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.5e-44 183.0 130 72.3
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.5e-44 183.0 131 71.8
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.5e-44 183.0 126 73.8
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 3.3e-44 181.8 124 71.8
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 3.3e-44 181.8 107 86.0
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 4.4e-44 181.4 127 70.1
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 5.7e-44 181.0 125 73.6
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 2.8e-43 178.7 107 84.1
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.4e-42 176.4 122 73.0
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 5.9e-41 171.0 125 74.4
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.0e-40 170.2 156 62.2
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 6.5e-40 167.5 126 65.1
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 6.5e-40 167.5 100 81.0
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.9e-39 166.0 129 65.1
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 2.5e-39 165.6 128 64.8
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 2.5e-39 165.6 128 64.8
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 2.5e-39 165.6 128 64.8
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.5e-39 165.6 167 55.1
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 3.2e-39 165.2 120 71.7
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 5.5e-39 164.5 128 66.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 9.4e-39 163.7 125 66.4
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.6e-38 162.9 115 68.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.6e-38 162.9 115 68.7
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.6e-38 162.9 127 63.8
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 2.7e-38 162.2 120 65.8
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 2.7e-38 162.2 121 66.1
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.7e-38 162.2 113 72.6
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 3.6e-38 161.8 127 64.6
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 3.6e-38 161.8 115 67.8
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 8.0e-38 160.6 125 65.6
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.4e-37 159.8 110 70.0
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.4e-37 159.8 104 76.0
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.8e-37 159.5 92 85.9
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.8e-37 159.5 95 83.2
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 3.0e-37 158.7 120 66.7
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 2.0e-36 156.0 96 80.2
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 7.5e-36 154.1 111 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.7e-35 152.9 109 68.8
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 3.7e-35 151.8 162 52.5
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.7e-35 151.8 110 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.3e-35 151.0 109 67.9
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 8.3e-35 150.6 129 62.0
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 5.4e-34 147.9 129 58.1
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 2.0e-33 146.0 93 79.6
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.7e-32 142.9 82 90.2
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 1.7e-32 142.9 87 79.3
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.8e-32 141.7 101 68.3
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.9e-31 139.4 106 65.1
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 7.2e-31 137.5 127 59.8
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 7.2e-31 137.5 90 73.3
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.6e-30 135.2 127 59.8
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 8.0e-30 134.0 83 84.3
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.8e-29 132.9 119 58.8
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 2.8e-27 125.6 78 79.5
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.5e-23 113.2 69 78.3
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 1.9e-23 112.8 75 70.7
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 5.6e-23 111.3 61 90.2
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 9.5e-23 110.5 77 71.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 2.8e-22 109.0 94 55.3
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.8e-22 109.0 63 79.4
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 6.1e-22 107.8 92 58.7
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 3.7e-19 98.6 124 49.2
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.2e-18 95.5 89 58.4
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 9.2e-18 94.0 103 42.7
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 6.6e-16 87.8 89 49.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 1.1e-13 80.5 114 43.0
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 5.4e-10 68.2 47 68.1
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.6e-09 66.6 65 55.4
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.6e-09 66.6 35 91.4
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 1.7e-08 63.2 93 34.4


User provided reference genes

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