Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.0e-86 322.4 160 100.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.2e-51 206.8 160 70.6
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.1e-28 127.9 138 59.4
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.3e-15 85.1 89 57.3
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.6e-14 82.8 89 52.8
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.6e-14 81.3 93 52.7
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-13 80.9 93 52.7
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-13 80.9 93 52.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.0e-13 80.9 89 52.8
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.3e-13 80.5 96 50.0
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.3e-13 80.5 89 51.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.3e-13 80.5 94 50.0
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.3e-13 80.5 89 50.6
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.7e-13 80.1 92 54.3
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.7e-13 80.1 105 43.8
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.7e-13 80.1 101 48.5
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 1.7e-13 80.1 89 51.7
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.2e-13 79.7 89 50.6
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.9e-13 79.3 92 51.1
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.9e-13 79.3 94 48.9
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 3.8e-13 79.0 93 51.6
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 3.8e-13 79.0 89 51.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.9e-13 78.6 90 54.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 4.9e-13 78.6 89 51.7
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 6.5e-13 78.2 89 49.4
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 6.5e-13 78.2 89 51.7
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 6.5e-13 78.2 102 47.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 8.4e-13 77.8 93 49.5
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 8.4e-13 77.8 89 50.6
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 8.4e-13 77.8 89 48.3
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 8.4e-13 77.8 89 51.7
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 8.4e-13 77.8 89 49.4
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 8.4e-13 77.8 94 46.8
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 8.4e-13 77.8 89 48.3
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.1e-12 77.4 89 50.6
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.4e-12 77.0 91 50.5
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.4e-12 77.0 93 51.6
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.4e-12 77.0 89 49.4
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.9e-12 76.6 88 50.0
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.9e-12 76.6 89 50.6
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.9e-12 76.6 92 50.0
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.5e-12 76.3 89 50.6
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.5e-12 76.3 93 49.5
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.5e-12 76.3 88 45.5
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.2e-12 75.9 93 48.4
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 3.2e-12 75.9 87 52.9
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.2e-12 75.9 90 50.0
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 4.2e-12 75.5 88 51.1
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 5.5e-12 75.1 89 51.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 7.1e-12 74.7 88 48.9
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 7.1e-12 74.7 88 48.9
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 7.1e-12 74.7 93 46.2
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 7.1e-12 74.7 89 47.2
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 9.3e-12 74.3 88 50.0
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 9.3e-12 74.3 93 48.4
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 9.3e-12 74.3 91 46.2
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-11 73.9 93 46.2
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.2e-11 73.9 93 46.2
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.2e-11 73.9 92 45.7
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.2e-11 73.9 90 52.2
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 1.2e-11 73.9 93 47.3
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.2e-11 73.9 89 47.2
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.6e-11 73.6 94 45.7
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.6e-11 73.6 93 45.2
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.6e-11 73.6 91 48.4
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.6e-11 73.6 91 48.4
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.1e-11 73.2 89 47.2
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.1e-11 73.2 86 52.3
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.7e-11 72.8 105 43.8
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 3.5e-11 72.4 92 45.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 3.5e-11 72.4 92 45.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 3.5e-11 72.4 92 45.7
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 6.1e-11 71.6 93 46.2
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 6.1e-11 71.6 93 47.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 6.1e-11 71.6 89 43.8
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 7.9e-11 71.2 93 45.2
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 7.9e-11 71.2 93 44.1
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 7.9e-11 71.2 88 46.6
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 7.9e-11 71.2 88 46.6
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 7.9e-11 71.2 88 46.6
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 7.9e-11 71.2 94 43.6
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.0e-10 70.9 100 48.0
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.0e-10 70.9 95 44.2
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.3e-10 70.5 93 46.2
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.3e-10 70.5 89 48.3
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.3e-10 70.5 93 43.0
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.8e-10 70.1 89 49.4
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.8e-10 70.1 111 43.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.8e-10 70.1 93 47.3
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.8e-10 70.1 93 47.3
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.3e-10 69.7 89 46.1
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 3.0e-10 69.3 87 47.1
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 3.9e-10 68.9 91 44.0
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 3.9e-10 68.9 91 44.0
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.9e-10 68.9 92 42.4
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 5.1e-10 68.6 83 48.2
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 5.1e-10 68.6 93 43.0
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.1e-10 68.6 89 44.9
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.7e-10 68.2 87 47.1
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.7e-10 68.2 93 46.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 8.7e-10 67.8 91 42.9
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 8.7e-10 67.8 87 47.1
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 8.7e-10 67.8 90 45.6
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.1e-09 67.4 81 50.6
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.1e-09 67.4 92 44.6
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.1e-09 67.4 87 44.8
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.1e-09 67.4 89 46.1
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.5e-09 67.0 88 45.5
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.5e-09 66.2 92 47.8
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.5e-09 66.2 92 47.8
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.5e-09 66.2 111 41.4
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 3.3e-09 65.9 88 43.2
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 5.7e-09 65.1 89 42.7
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.7e-09 65.1 93 41.9
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 7.4e-09 64.7 88 44.3
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-08 63.9 89 42.7
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.3e-08 63.9 83 45.8
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.3e-08 63.9 87 43.7
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-08 63.9 86 44.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-08 63.9 91 44.0
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-08 63.9 87 43.7
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 1.3e-08 63.9 101 41.6
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-08 63.5 88 40.9
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.2e-08 63.2 87 41.4
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.8e-08 62.8 83 45.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.7e-08 62.4 91 44.0
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 3.7e-08 62.4 86 45.3
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 3.7e-08 62.4 90 42.2
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.4e-07 60.5 90 41.1
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.8e-07 60.1 80 47.5
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.8e-07 60.1 83 43.4
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 2.4e-07 59.7 84 44.0
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-07 59.7 81 43.2
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.9e-07 58.2 81 42.0
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.9e-07 58.2 81 42.0
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.9e-07 58.2 81 42.0
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.5e-06 57.0 82 42.7
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.4e-06 55.8 80 42.5
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 3.4e-06 55.8 81 45.7
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 3.4e-06 55.8 111 38.7
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.5e-06 55.5 81 43.2
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-06 55.5 81 40.7
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-06 55.5 81 40.7
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 5.9e-06 55.1 82 37.8
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-05 54.3 81 40.7


User provided reference genes

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