Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001061 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D000443 1.0e-33 146.0 66 100.0
CiPaw.13G005500 Carya illinoinensis HOM05D000433 ORTHO05D000443 1.5e-19 99.0 46 97.8
CiPaw.13G005400 Carya illinoinensis HOM05D000433 ORTHO05D000443 3.3e-19 97.8 46 95.7
DCAR_003216 Daucus carota HOM05D000433 ORTHO05D000443 5.5e-19 97.1 48 89.6
ClCG09G004110 Citrullus lanatus HOM05D000433 ORTHO05D000443 7.2e-19 96.7 46 93.5
CsaV3_7G031010 Cucumis sativus L. HOM05D000433 ORTHO05D000443 7.2e-19 96.7 46 93.5
Hma1.2p1_0184F.1_g081210 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 7.2e-19 96.7 46 95.7
Sed0007420 Sechium edule HOM05D000433 ORTHO05D000443 7.2e-19 96.7 46 93.5
Sed0008090 Sechium edule HOM05D000433 ORTHO05D000443 7.2e-19 96.7 46 93.5
MELO3C023555.2 Cucumis melo HOM05D000433 ORTHO05D000443 9.5e-19 96.3 46 93.5
Rhsim07G0056200 Rhododendron simsii HOM05D000433 ORTHO05D000443 9.5e-19 96.3 46 91.3
DCAR_022386 Daucus carota HOM05D000433 ORTHO05D000443 1.2e-18 95.9 48 87.5
Haze_03200 Corylus avellana HOM05D000433 ORTHO05D000443 1.6e-18 95.5 46 93.5
Potri.009G060500 Populus trichocarpa HOM05D000433 ORTHO05D000443 1.6e-18 95.5 46 93.5
Sabra09G0044600 Salix brachista HOM05D000433 ORTHO05D000443 1.6e-18 95.5 46 93.5
TAR369G0420 Trochodendron aralioides HOM05D000433 ORTHO05D000443 1.6e-18 95.5 46 93.5
CANSAT80G2227 Cannabis sativa HOM05D000433 ORTHO05D000443 2.8e-18 94.7 56 78.6
Haze_03198 Corylus avellana HOM05D000433 ORTHO05D000443 2.8e-18 94.7 46 91.3
DCAR_022385 Daucus carota HOM05D000433 ORTHO05D000443 2.8e-18 94.7 46 93.5
Dinv43438 Davidia involucrata HOM05D000433 ORTHO05D000443 2.8e-18 94.7 46 93.5
Cfa010772 Carpinus fangiana HOM05D000433 ORTHO05D000443 3.6e-18 94.4 46 91.3
MELO3C032097.2 Cucumis melo HOM05D000433 ORTHO05D000443 4.7e-18 94.0 46 91.3
DCAR_022390 Daucus carota HOM05D000433 ORTHO05D000443 4.7e-18 94.0 46 91.3
Hma1.2p1_0184F.1_g081190 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 6.1e-18 93.6 46 87.0
Lj9C633G15 Lonicera japonica HOM05D000433 ORTHO05D000443 6.1e-18 93.6 46 89.1
Haze_03199 Corylus avellana HOM05D000433 ORTHO05D000443 8.0e-18 93.2 46 89.1
Rhsim07G0189000 Rhododendron simsii HOM05D000433 ORTHO05D000443 8.0e-18 93.2 46 89.1
TAR623G0564 Trochodendron aralioides HOM05D000433 ORTHO05D000443 8.0e-18 93.2 46 89.1
Potri.001G265400 Populus trichocarpa HOM05D000433 ORTHO05D000443 1.0e-17 92.8 46 89.1
Potri.001G265900 Populus trichocarpa HOM05D000433 ORTHO05D000443 1.0e-17 92.8 46 89.1
QL04p006235 Quercus lobata HOM05D000433 ORTHO05D000443 1.0e-17 92.8 46 91.3
Potri.001G265600 Populus trichocarpa HOM05D000433 ORTHO05D000443 1.4e-17 92.4 46 87.0
Prupe.2G014700 Prunus persica HOM05D000433 ORTHO05D000443 1.4e-17 92.4 46 89.1
MD02G1309700 Malus domestica HOM05D000433 ORTHO05D000443 1.8e-17 92.0 56 75.0
GSVIVG01032103001 Vitis vinifera HOM05D000433 ORTHO05D000443 1.8e-17 92.0 46 91.3
GSVIVG01032110001 Vitis vinifera HOM05D000433 ORTHO05D000443 1.8e-17 92.0 46 91.3
MBI01_g18876_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 2.3e-17 91.7 48 85.4
Oeu007851.1 Olea europaea HOM05D000433 ORTHO05D000443 2.3e-17 91.7 46 87.0
vmacro04812 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 2.3e-17 91.7 46 84.8
COL.COLO4_04858 Corchorus olitorius HOM05D000433 ORTHO05D000443 3.0e-17 91.3 46 87.0
Duzib268G0366 Durio zibethinus HOM05D000433 ORTHO05D000443 3.0e-17 91.3 46 87.0
Nn2g15315 Nelumbo nucifera HOM05D000433 ORTHO05D000443 3.0e-17 91.3 46 87.0
Sabra16G0163100 Salix brachista HOM05D000433 ORTHO05D000443 3.0e-17 91.3 47 83.0
FvH4_7g01130 Fragaria vesca HOM05D000433 ORTHO05D000443 4.0e-17 90.9 46 87.0
FAN01G0975 Fragaria x ananassa HOM05D000433 ORTHO05D000443 4.0e-17 90.9 46 87.0
FAN03G3380 Fragaria x ananassa HOM05D000433 ORTHO05D000443 4.0e-17 90.9 46 87.0
FAN06G3200 Fragaria x ananassa HOM05D000433 ORTHO05D000443 4.0e-17 90.9 46 87.0
RcHm_v2.0_Chr1g0316181 Rosa chinensis HOM05D000433 ORTHO05D000443 4.0e-17 90.9 46 87.0
RcHm_v2.0_Chr1g0316311 Rosa chinensis HOM05D000433 ORTHO05D000443 4.0e-17 90.9 46 87.0
Thecc.01G410200 Theobroma cacao HOM05D000433 ORTHO05D000443 5.2e-17 90.5 46 84.8
EL10Ac2g04335 Beta vulgaris HOM05D000433 ORTHO05D000443 6.8e-17 90.1 46 87.0
CANSAT80G1890 Cannabis sativa HOM05D000433 ORTHO05D000443 6.8e-17 90.1 56 73.2
Carub.0005s3013 Capsella rubella HOM05D000433 ORTHO05D000443 6.8e-17 90.1 46 82.6
Lalb_Chr20g0107981 Lupinus albus HOM05D000433 ORTHO05D000443 6.8e-17 90.1 46 87.0
Aqoxy2G00193 Aquilegia oxysepala HOM05D000433 ORTHO05D000443 8.9e-17 89.7 56 71.4
A09p55970 Brassica napus HOM05D000433 ORTHO05D000443 8.9e-17 89.7 46 82.6
BraA09t40999Z Brassica rapa HOM05D000433 ORTHO05D000443 8.9e-17 89.7 46 82.6
CANSAT80G0704 Cannabis sativa HOM05D000433 ORTHO05D000443 8.9e-17 89.7 46 87.0
ECA234G3403 Erigeron canadensis HOM05D000433 ORTHO05D000443 8.9e-17 89.7 46 87.0
Oeu049497.3 Olea europaea HOM05D000433 ORTHO05D000443 8.9e-17 89.7 46 84.8
AL5G46380 Arabidopsis lyrata HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 82.6
AT3G63520 Arabidopsis thaliana HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 82.6
MSTRG.17028 Avicennia marina HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 84.8
AUR62023071 Chenopodium quinoa HOM05D000433 ORTHO05D000443 1.2e-16 89.4 47 85.1
Migut.B01292 Erythranthe guttata HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 82.6
Eucgr.G03374 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 84.8
Thhalv10005877m.g Eutrema salsugineum HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 82.6
FAN10G2567 Fragaria x ananassa HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 84.8
Lsat_1_v5_gn_4_31520 Lactuca sativa HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 84.8
THA.LOC104823025 Tarenaya hassleriana HOM05D000433 ORTHO05D000443 1.2e-16 89.4 46 82.6
BcaB02g08056 Brassica carinata HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
BcaC02g10356 Brassica carinata HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
A04p00060 Brassica napus HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
C04p29820 Brassica napus HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
BraA04t15726Z Brassica rapa HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
CARHR291450 Cardamine hirsuta HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
Ciclev10031039m.g Citrus clementina HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 84.8
Medtr8g037275 Medicago truncatula HOM05D000433 ORTHO05D000443 1.5e-16 89.0 56 71.4
Medtr8g037290 Medicago truncatula HOM05D000433 ORTHO05D000443 1.5e-16 89.0 56 71.4
Sp5g00060 Schrenkiella parvula HOM05D000433 ORTHO05D000443 1.5e-16 89.0 46 80.4
BcaC07g40898 Brassica carinata HOM05D000433 ORTHO05D000443 2.0e-16 88.6 46 80.4
C08p38950 Brassica napus HOM05D000433 ORTHO05D000443 2.0e-16 88.6 46 80.4
BolC8t51468H Brassica oleracea HOM05D000433 ORTHO05D000443 2.0e-16 88.6 46 80.4
Oeu048989.1 Olea europaea HOM05D000433 ORTHO05D000443 2.0e-16 88.6 46 82.6
Hund14182 Selenicereus undatus HOM05D000433 ORTHO05D000443 2.0e-16 88.6 46 82.6
Solyc01g087250.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 2.0e-16 88.6 46 84.8
TWI73G0222 Tripterygium wilfordii HOM05D000433 ORTHO05D000443 2.0e-16 88.6 46 84.8
C08p38960 Brassica napus HOM05D000433 ORTHO05D000443 2.6e-16 88.2 46 80.4
CANSAT80G0472 Cannabis sativa HOM05D000433 ORTHO05D000443 2.6e-16 88.2 58 70.7
Manes.10G141300 Manihot esculenta HOM05D000433 ORTHO05D000443 2.6e-16 88.2 46 84.8
Sopen01g034300 Solanum pennellii HOM05D000433 ORTHO05D000443 2.6e-16 88.2 46 84.8
Ah.10g038810 Amaranthus hybridus HOM05D000433 ORTHO05D000443 3.4e-16 87.8 46 84.8
Gohir.A08G054300 Gossypium hirsutum HOM05D000433 ORTHO05D000443 3.4e-16 87.8 46 80.4
Gohir.D08G064000 Gossypium hirsutum HOM05D000433 ORTHO05D000443 3.4e-16 87.8 46 80.4
Gorai.004G066100 Gossypium raimondii HOM05D000433 ORTHO05D000443 3.4e-16 87.8 46 80.4
Oeu007868.2 Olea europaea HOM05D000433 ORTHO05D000443 3.4e-16 87.8 46 82.6
PGR044G1035 Punica granatum HOM05D000433 ORTHO05D000443 3.4e-16 87.8 45 86.7
TPR.G1878 Trifolium pratense HOM05D000433 ORTHO05D000443 3.4e-16 87.8 46 84.8
AUR62009389 Chenopodium quinoa HOM05D000433 ORTHO05D000443 4.4e-16 87.4 46 84.8
Cc02_g28080 Coffea canephora HOM05D000433 ORTHO05D000443 4.4e-16 87.4 46 82.6
PSO541G1646 Papaver somniferum HOM05D000433 ORTHO05D000443 4.4e-16 87.4 46 84.8
PSO675G1923 Papaver somniferum HOM05D000433 ORTHO05D000443 4.4e-16 87.4 46 84.8
Atru.chr11.2617 Acer truncatum HOM05D000433 ORTHO05D000443 5.7e-16 87.0 46 84.8
Aa31LG10G17400 Aethionema arabicum HOM05D000433 ORTHO05D000443 5.7e-16 87.0 46 80.4
AUR62025811 Chenopodium quinoa HOM05D000433 ORTHO05D000443 7.5e-16 86.7 46 84.8
AUR62044218 Chenopodium quinoa HOM05D000433 ORTHO05D000443 7.5e-16 86.7 46 84.8
Lalb_Chr03g0034111 Lupinus albus HOM05D000433 ORTHO05D000443 7.5e-16 86.7 46 82.6
Peaxi162Scf00953g00218 Petunia axillaris HOM05D000433 ORTHO05D000443 7.5e-16 86.7 46 82.6
PGR044G0170 Punica granatum HOM05D000433 ORTHO05D000443 7.5e-16 86.7 45 84.4
A09p55980 Brassica napus HOM05D000433 ORTHO05D000443 9.8e-16 86.3 46 78.3
CAN.G219.7 Capsicum annuum HOM05D000433 ORTHO05D000443 9.8e-16 86.3 46 84.8
Ca_23892_v3 Cicer arietinum L. HOM05D000433 ORTHO05D000443 9.8e-16 86.3 46 82.6
Eucgr.G03362 Eucalyptus grandis HOM05D000433 ORTHO05D000443 9.8e-16 86.3 46 78.3
Lj7C571T11 Lonicera japonica HOM05D000433 ORTHO05D000443 9.8e-16 86.3 46 84.8
Nitab4.5_0004290g0050 Nicotiana tabacum HOM05D000433 ORTHO05D000443 9.8e-16 86.3 46 82.6
Glyma.12G236700 Glycine max HOM05D000433 ORTHO05D000443 1.3e-15 85.9 52 73.1
Glyma.13G202200 Glycine max HOM05D000433 ORTHO05D000443 1.3e-15 85.9 52 73.1
SalBow5G2570 Salvia bowleyana HOM05D000433 ORTHO05D000443 1.3e-15 85.9 46 73.9
Sc14g0005050 Simmondsia chinensis HOM05D000433 ORTHO05D000443 1.3e-15 85.9 46 80.4
PGR031G0340 Punica granatum HOM05D000433 ORTHO05D000443 1.7e-15 85.5 46 80.4
arahy.Tifrunner.gnm1.ann1.8D7DUE Arachis hypogaea HOM05D000433 ORTHO05D000443 2.2e-15 85.1 46 80.4
arahy.Tifrunner.gnm1.ann1.CX54DC Arachis hypogaea HOM05D000433 ORTHO05D000443 2.2e-15 85.1 46 82.6
arahy.Tifrunner.gnm1.ann1.GV0PL5 Arachis hypogaea HOM05D000433 ORTHO05D000443 2.2e-15 85.1 46 82.6
Nitab4.5_0002918g0020 Nicotiana tabacum HOM05D000433 ORTHO05D000443 2.2e-15 85.1 46 78.3
MSTRG.20579 Avicennia marina HOM05D000433 ORTHO05D000443 2.8e-15 84.7 46 78.3
Nitab4.5_0007165g0030 Nicotiana tabacum HOM05D000433 ORTHO05D000443 2.8e-15 84.7 46 82.6
HanXRQChr17g0562991 Helianthus annuus HOM05D000433 ORTHO05D000443 3.7e-15 84.3 46 80.4
QL04p006260 Quercus lobata HOM05D000433 ORTHO05D000443 3.7e-15 84.3 56 69.6
VMungo1127G1125 Vigna mungo HOM05D000433 ORTHO05D000443 3.7e-15 84.3 56 67.9
Ciclev10031014m.g Citrus clementina HOM05D000433 ORTHO05D000443 4.9e-15 84.0 46 78.3
BcaB08g35129 Brassica carinata HOM05D000433 ORTHO05D000443 6.3e-15 83.6 46 76.1
Medtr8g037315 Medicago truncatula HOM05D000433 ORTHO05D000443 6.3e-15 83.6 46 80.4
SGA_v2.0_scaffold119G32738 Striga asiatica HOM05D000433 ORTHO05D000443 6.3e-15 83.6 46 78.3
HPP92_023574 Vanilla planifolia HOM05D000433 ORTHO05D000443 6.3e-15 83.6 46 84.8
MD07G1011500 Malus domestica HOM05D000433 ORTHO05D000443 8.3e-15 83.2 56 67.9
Peaxi162Scf00953g00216 Petunia axillaris HOM05D000433 ORTHO05D000443 8.3e-15 83.2 56 66.1
Peaxi162Scf00953g00316 Petunia axillaris HOM05D000433 ORTHO05D000443 8.3e-15 83.2 56 66.1
Phvul.011G211200 Phaseolus vulgaris HOM05D000433 ORTHO05D000443 8.3e-15 83.2 56 67.9
ATR0605G288 Amborella trichopoda HOM05D000433 ORTHO05D000443 1.1e-14 82.8 46 82.6
Carub.0002s1722 Capsella rubella HOM05D000433 ORTHO05D000443 1.1e-14 82.8 45 77.8
Lj3g0009657 Lotus japonicus HOM05D000433 ORTHO05D000443 1.1e-14 82.8 46 78.3
Sopen01g034310 Solanum pennellii HOM05D000433 ORTHO05D000443 1.1e-14 82.8 46 78.3
CAN.G219.8 Capsicum annuum HOM05D000433 ORTHO05D000443 1.4e-14 82.4 46 78.3
Medtr8g037310 Medicago truncatula HOM05D000433 ORTHO05D000443 1.4e-14 82.4 56 64.3
Psat4g148840 Pisum sativum HOM05D000433 ORTHO05D000443 1.4e-14 82.4 46 78.3
SalBow5G2984 Salvia bowleyana HOM05D000433 ORTHO05D000443 1.4e-14 82.4 46 76.1
SalBow5G5576 Salvia bowleyana HOM05D000433 ORTHO05D000443 1.4e-14 82.4 46 76.1
Solyc01g087260.4 Solanum lycopersicum HOM05D000433 ORTHO05D000443 1.4e-14 82.4 46 78.3
PGR044G0030 Punica granatum HOM05D000433 ORTHO05D000443 3.1e-14 81.3 45 82.2
Lalb_Chr19g0132241 Lupinus albus HOM05D000433 ORTHO05D000443 4.1e-14 80.9 46 71.7
Peaxi162Scf00953g00416 Petunia axillaris HOM05D000433 ORTHO05D000443 4.1e-14 80.9 46 76.1
CDE10G1079 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 9.2e-14 79.7 46 78.3
Psat4g148800 Pisum sativum HOM05D000433 ORTHO05D000443 1.2e-13 79.3 46 76.1
Carub.0002s1723 Capsella rubella HOM05D000433 ORTHO05D000443 1.6e-13 79.0 46 71.7
Zm00001eb402840 Zea mays HOM05D000433 ORTHO05D000443 2.0e-13 78.6 56 58.9
CANSAT80G0689 Cannabis sativa HOM05D000433 ORTHO05D000443 3.5e-13 77.8 55 65.5
HanXRQChr16g0524461 Helianthus annuus HOM05D000433 ORTHO05D000443 3.5e-13 77.8 45 75.6
PGR044G2631 Punica granatum HOM05D000433 ORTHO05D000443 5.9e-13 77.0 47 72.3
HanXRQChr16g0524481 Helianthus annuus HOM05D000433 ORTHO05D000443 1.7e-12 75.5 45 73.3
ATR0605G328 Amborella trichopoda HOM05D000433 ORTHO05D000443 2.9e-12 74.7 51 60.8
Os12g0640600 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D000443 5.0e-12 73.9 56 57.1
CAN.G41.1 Capsicum annuum HOM05D000433 ORTHO05D000443 1.1e-11 72.8 46 67.4
PGR004G1132 Punica granatum HOM05D000433 ORTHO05D000443 1.6e-10 68.9 52 59.6
PGR004G2078 Punica granatum HOM05D000433 ORTHO05D000443 1.6e-10 68.9 52 59.6
PSO782G5515 Papaver somniferum HOM05D000433 ORTHO05D000443 4.7e-10 67.4 35 80.0
PSO782G2691 Papaver somniferum HOM05D000433 ORTHO05D000443 4.0e-09 64.3 34 76.5
Mapoly0003s0307 Marchantia polymorpha HOM05D000433 ORTHO05D000443 8.9e-09 63.2 46 58.7
SMO361G0560 Selaginella moellendorffii HOM05D000433 ORTHO05D000443 2.0e-08 62.0 41 58.5
SMO004G0032 Selaginella moellendorffii HOM05D000433 ORTHO05D000443 4.4e-08 60.8 41 56.1
Pp3c21_12920 Physcomitrium patens HOM05D000433 ORTHO05D000443 5.8e-08 60.5 42 54.8
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.3e-07 56.6 41 70.7
Pp3c22_6380 Physcomitrium patens HOM05D000433 ORTHO05D000443 8.3e-07 56.6 46 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1284 Anthoceros agrestis HOM05D000433 ORTHO05D000443 1.4e-06 55.8 35 60.0


User provided reference genes

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